Planococcus donghaensis: BCM40_01735
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Entry
BCM40_01735 CDS
T04451
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCM40_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdg03019
]
BCM40_01735
03009 Ribosome biogenesis [BR:
pdg03009
]
BCM40_01735
Enzymes [BR:
pdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCM40_01735
Messenger RNA biogenesis [BR:
pdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCM40_01735
Ribosome biogenesis [BR:
pdg03009
]
Prokaryotic type
rRNA helicases
BCM40_01735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Helicase_RecD
AAA_19
Ribosomal_L50
Motif
Other DBs
NCBI-ProteinID:
ANU22135
UniProt:
A0A1C7EEK8
LinkDB
All DBs
Position
complement(2934613..2936058)
Genome browser
AA seq
481 aa
AA seq
DB search
MSNKKFNEYNISEQIVKALDGLGYTKPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGI
PICELVDWEENKPQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELK
QKCHVVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVEAIINKLPKQRTT
MLFSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTIVE
NPDSCIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLVATD
VAARGIDIDSITHVINYDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEIESY
IGFEIPHRTAPSVHEVDAAMQAFTEKLESRPKLKKNKNEQVNKDILKLYFNGGKKKKLRA
FDFVGTLTSIPGVTAEDIGIIKIQDTVTYIDILNGKGPMVLKAMKDKTVKGKTLKVHKAN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaaaaaatttaacgaatacaatattagtgaacaaatcgtaaaagcacttgat
ggccttgggtatacaaaaccgacagaagtacaggaaaaagttatccctgtagccctttct
aagactgacctaacagtaaagtcgcaaaccggtagtgggaaaacagcagcattcggtatt
ccgatatgtgagctggttgactgggaagaaaacaaaccgcaagcgctgattttgacgcca
acacgtgaactggcagaccaagtaaaagaagacataacaaatattgggcgttttaaacgt
attaaagctgcagcagtttacggtaaacaaccatttgcttatcagcaagcagaactcaag
cagaaatgccatgttgtagttggcactccaggtcgtgtgttggatcatatcgagcgtgga
acattaaaattagagcaaattgagtatcttgttcttgacgaagcagatgaaatgttgaat
atggggtttgttgaacaagtagaagcaattattaacaaattgccaaaacagcggacaacg
atgcttttttcagcaacattgcctgaaaatgtagaaaaactacagaaaaagtacatgatt
gatcctcaacatatcgaaattgcctctacagaaacgttgacggatcaaattgatcattcg
ttatttgttgtagcagagcaaaagaagttttcactattacgtgatgtgacgattgtggaa
aatccggatagctgtattattttttgtcgcacaaaagacaatgttgactttgtaatggaa
caattagaaaaacattattacacatgtgataaattgcatggtggcatgttgcaagaagac
cggacggcggttatgaacgaatttaagcgtggagaattccgatatttagtagcaactgac
gtagcagctcgtggaattgacattgacagcatcacgcatgtcatcaattacgacttacca
atggaaaaagaaagttacgtgcaccgttcaggtcgtacaggacgtgctgggaaaacaggt
aaagccatttcgtttgtaacgccaaacgaagataaatttttagctgaaattgaaagctat
atcggatttgaaattccacatagaaccgcaccttctgttcatgaagtggatgcagcgatg
caggcatttacagaaaaactagaaagtcgtccgaaattaaagaaaaacaaaaacgagcaa
gtcaataaagatattctgaaactgtattttaacggtggtaagaaaaagaaactccgtgct
tttgactttgtaggaacgttaacaagtattcccggagtgacagctgaagatatcgggatc
attaaaattcaagatacggtaacgtatatcgatattttaaatggcaaaggtccgatggta
ttaaaagcaatgaaagataagaccgttaaaggcaaaacattgaaagttcataaagcaaat
aaataa
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