Planococcus donghaensis: BCM40_06200
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Entry
BCM40_06200 CDS
T04451
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCM40_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdg03019
]
BCM40_06200
03400 DNA repair and recombination proteins [BR:
pdg03400
]
BCM40_06200
Enzymes [BR:
pdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCM40_06200
Messenger RNA biogenesis [BR:
pdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCM40_06200
DNA repair and recombination proteins [BR:
pdg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BCM40_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ANU22986
UniProt:
A0A1C7EH50
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All DBs
Position
complement(1985513..1986940)
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AA seq
475 aa
AA seq
DB search
MNLEELLYSTYGFSSFRPGQKEIIEQVIAGEDVIALLPTGMGKSICYQLPAKILPDSVLI
VSPLLSLMQDQVAQLKKMGEKSVVAINSFLKPEDKDRIMTNLSSYKFIFISPEMLVQSFI
KKKLREIRVSLLVADEAHCISQWGFDFRPDYLRISEILPILKFPQVLALTATATDKVTEE
IKEYLALIKPYVYSHPMDRKNIVYDIKKFEDSGEKLEFLKTFIQKFKGPGIIYAGTRKKS
QELSMLLTEQGISSAYYHGGMEHQDRVFIQQQFQNGEVEWICSTNAFGMGVHIPNIRQVI
HFQVPTSIEGYVQEVGRAGRDGLPALATLLYARGDEALLESLVMDDLPTQHEIEAVFNNG
PSATHLIDQGIVRETAFRVIAYWMTKLPLEGVTNQIELLRKGKWQQASKIRELISRDGCL
RRYIIGSFDQELITKPDNCCVNDGIDYSVFEAYSYSEKKAIPLDWQDRLSVILPI
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggaggagttactatattcaacttacggtttttcttcttttcgaccagggcaa
aaagaaattattgaacaagtaatagctggggaagacgtaattgcgttattgccaactggc
atgggaaaatccatttgttatcaattgccagcgaaaattttgccggatagtgtcttgatt
gtttcgcctttactttccttaatgcaagaccaagtagcgcaactaaaaaaaatgggcgaa
aagtcagttgtggccattaactcttttttaaaaccagaagacaaagaccgaattatgacc
aaccttagctcttataaatttatatttatatctccggaaatgttagttcagtcgtttatt
aaaaaaaaattacgagaaatacgagtttctttattagtagctgacgaagcacattgtatt
tctcaatggggattcgattttaggccagattatttacggatctctgaaatattgccaatt
ttaaaatttccacaagttttggcattaaccgccactgctactgacaaagttactgaagaa
ataaaagagtatttagcacttatcaaaccttatgtgtatagccatccgatggacagaaaa
aatattgtctacgatattaaaaaatttgaagatagtggtgaaaagctcgagtttttaaaa
acatttattcagaagtttaaaggtcctggaattatttatgccggaactagaaaaaagtcc
caagagttatctatgcttttaacagaacaaggcatttcatctgcgtattaccatggaggc
atggaacatcaggatcgagttttcattcaacagcaatttcaaaatggggaagtcgagtgg
atttgttcaaccaatgcttttggtatgggtgtccacattccgaatattcgacaagttatc
cattttcaagtgccaacttccattgaagggtatgtacaggaagtgggaagagcgggaaga
gatggtcttcctgctttagccacgcttctttatgcccgaggagatgaagccttgcttgaa
agtttagtgatggatgatttacccacccaacatgaaatagaagcagtatttaataatgga
ccatcagcaacacatttaatcgatcaaggaattgtaagagaaacagcgtttcgtgtcatc
gcttactggatgacgaagttaccactagagggtgtcacaaatcaaatagaactgctaaga
aaaggtaaatggcagcaagcatcgaaaattcgtgagttgatttcacgagacggttgtttg
cgtcgttatattatcggttcatttgatcaggaacttataaccaagcctgacaattgttgt
gtgaatgatggaattgattatagtgtgtttgaggcgtattcttattctgaaaaaaaggca
ataccgcttgattggcaagatcgtttaagtgtaatattacctatataa
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