Planococcus donghaensis: BCM40_13575
Help
Entry
BCM40_13575 CDS
T04451
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCM40_13575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdg03019
]
BCM40_13575
03009 Ribosome biogenesis [BR:
pdg03009
]
BCM40_13575
Enzymes [BR:
pdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCM40_13575
Messenger RNA biogenesis [BR:
pdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCM40_13575
Ribosome biogenesis [BR:
pdg03009
]
Prokaryotic type
rRNA helicases
BCM40_13575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
ANU24889
UniProt:
A0A1C7EM49
LinkDB
All DBs
Position
510630..512093
Genome browser
AA seq
487 aa
AA seq
DB search
MGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTKDGNVQGLIIAPT
RELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNRPQIIVGTPGRLLDHINRRT
LKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLFSATMPDAIRRIAEKFMKT
PEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPELAIVFGRTKRRVDELAKA
LNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVYNFDIPQ
DPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTKKKMEALVPPTANEAVLGQK
RVAMEQLLEMTEKNNLGDYRDFATQMLEKHDAVDLIAAALKTMTKEPEDIPVSISEERPL
PSRGGGGYKGKGGGGRSGGGGGYKGNRSSGSSRPSSSSRGASSGASRRREGGSGGGRPGR
TTRRSES
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaagaagcaacaccgattcaagagggtacaatccgtcttggtatggaaggt
aaagacatcattggacaagcgcaaactggtactggtaaaactacagctttcggtattcct
ttgattgaaaaaattgacactaaagatggtaatgttcaaggattaatcatcgcaccaaca
cgcgaattggcaatccaagtttcagaagaactttacagactgggtcaagataaaaacgta
cgtattctttcagtatacggcggccaagaaattagccgacaaatccgtgcacttaaaaac
cgtccgcaaattatcgttggtactccaggacgtctattagaccatatcaaccgtcgtacg
cttaaattggacaatgtaaacacattaatccttgatgaagcagacgaaatgttgaacatg
ggctttatcgaagacattcaaacaattatggcaagtgttcctgatactcgtcaaacattg
ttattctcagcaactatgccggatgcaatccgccgtattgcagagaaattcatgaaaact
ccagaaatcgttaaaatcaaatcaaaagaaatgactgttgaaaacattgagcagttctac
gtgaaatctgtagagcgcgagaaatttgatttcctttcacgtcttttgaatgttcaacaa
ccggaacttgcgatcgttttcggacgtacaaagcgccgtgttgacgaattagcaaaagct
ttaaatatccgcggttaccttgctgaaggtattcacggtgatttaagccaagcaaaacgt
atgtcagttttaaaacaatttaaagcaggcaaaatcgatattttagttgcaacagacgta
gcagctcgcggacttgatatctcaggcgtatcacacgtatacaactttgatattccacaa
gatcctgaaagctatgttcaccgtatcggccgtactggtcgtgcaggtaaaaaaggagtc
gcagtaacgtttgtaacaccacgtgaaatgggctacttgagcatcgttgaacgcacaact
aagaaaaaaatggaagcattggtacctccaactgcgaacgaagctgtacttggccaaaaa
cgcgttgctatggaacaattgcttgaaatgacagagaaaaacaatcttggcgattaccgc
gacttcgcgacgcaaatgcttgaaaagcatgatgcggtcgacttgattgcagcagctctt
aaaacaatgactaaagagccggaagatattccagtttctatttccgaagaacgtcctttg
ccatcacgcggaggcggcggatataaaggtaaaggcggcggcggacgcagtggcggaggc
ggcggttacaaaggtaaccgttcatcaggttcatctcgtccatcatcatctagccgtgga
gcaagctcaggcgcaagccgacgtcgtgaaggcggaagcggtggcggacgtccaggacgt
acgactcgtcgtagcgaatcttaa
DBGET
integrated database retrieval system
