Planococcus donghaensis: BCM40_15550
Help
Entry
BCM40_15550 CDS
T04451
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BCM40_15550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdg03021
]
BCM40_15550
03400 DNA repair and recombination proteins [BR:
pdg03400
]
BCM40_15550
Enzymes [BR:
pdg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BCM40_15550
Transcription machinery [BR:
pdg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BCM40_15550
DNA repair and recombination proteins [BR:
pdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BCM40_15550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANU24678
UniProt:
A0A1C7ELG2
LinkDB
All DBs
Position
142013..145618
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVMIAYQTGHVHLHTRIAIQ
AGAVNNPTFTEEQNKMLLLTTVGKIIFNEILPKSFPYINEPTDFNLQVETPAKYFVPTTT
DIRKHIEEAELVTPFKKKILGEIIAEVFKRFHITETSKMLDRMKSLGFKYSTQAGITVGV
SDIVVLPDKGEILISAQENVDKVMKQFRRGLITEEERYARVISYWSNAKDIIQGKLMASL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKEIIVAKDELITQDLTRLIVEAGIKEVTIRSAFTCNTKHGICK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEIEEIREGQKEVTFQGDVETRKYLAPYNARIKVQVDDAIVR
GEVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAAQQEIVGTE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaatcaattaccgtacattaaaa
cctgaaaaagatggtttgttctgcgaacgtattttcggtcctacaaaggattgggaatgt
cattgtggtaaatacaaacgcgttcgttataaaggtgttgtctgtgatcgttgtggcgtt
gaagttacacgttcaaaagttcgccgtgagcgcatgggacacattgaattagcagctcct
gtttcacacatttggtatttcaaaggaattccaagccgtatgggacttatcctagatatg
tctccacgttcgcttgaagaagttatttacttcgcttcttacgtagtaatcgaccctgcg
gatacaccacttgaaaagaaacagcttctatctgaaaaagaataccgcgcttaccgtgat
aagtttgggaaaaaattccaagctgctatgggagcagaagcaatcaaacgtctattgcaa
gaaattgaccttgagcgcgaaacggattctttaaaagaagagttgaaaacagctcaaggc
caacgccgcactcgtgcgattaaacgccttgaagtcgtagagtcattccgtaactcagga
aacaaccctgattggatgattttagatgtgctacctgttattccacctgaactacgtccg
atggttcaattagatggtggtcgctttgcgacttctgatttaaatgacttgtatcgccgc
gtaattaaccggaataaccgtttaaaacgtcttttggatctgggtgcaccaagcattatc
gttcaaaacgaaaaacgcatgcttcaagaagctgttgatgctttgatcgataacggtcgt
cgtggtcgtccggttacgggaccaggtaaccgtccattgaaatctctttctcatatgtta
aaaggtaagcaaggacgtttccgtcaaaaccttcttggtaaacgagttgattactcaggc
cgttcagtaattgtagttggacctaacctgaaaatgtatcaatgtggtttgccgaaagga
atggcaatcgagctgtttaaaccttttgttatgaaggaattggttgaacgtggattggct
cacaacattaagagtgcaaaacgcaaaattgaacgtcttcattctgaagtttgggatgta
ttagaagatgtgatcaaggagcatccggttctattgaaccgagcaccaactcttcacaga
ttaggtatccaggcatttgaaccgacactagttgaaggtaaagcaatccgtctacatcca
cttgtatgtactgcatacaatgccgattttgatggtgaccaaatggctgttcacgtacct
ttatcttctgaagcacaagctgaagcaagattattgatgcttgcagctcaaaacattttg
aatccaaaagacggaaaacctgttgtaacaccatctcaggatatggttttaggaaactat
tacttaacacttgagcgtaaaggtgctacaggagaaggcgctactttctcaggacctgaa
gaagttatgatcgcttatcaaacaggccatgtgcatttgcatacgcgtattgcgattcaa
gctggagctgtaaacaacccgacgttcacagaagaacaaaacaagatgcttttattgaca
actgttggtaaaattattttcaatgaaattctgccgaagtcattcccatatattaacgaa
ccgactgacttcaacttgcaggtagaaacaccagcgaaatatttcgttcccacaacgact
gatattcgtaagcatattgaagaagcggaacttgtaacaccgtttaaaaagaaaattctt
ggtgaaatcattgcagaagtattcaaacgtttccatattacggaaacttcgaaaatgctt
gatcgcatgaagagccttggatttaaatattcgacacaagccggcatcactgttggtgtg
tcagatatcgtagttcttccagataagggagaaattttaatcagtgcacaagaaaatgta
gataaagtaatgaaacaattccgtcgcggattgattacagaagaagaacgatatgcacgt
gtcatttcgtattggagtaatgcaaaagatatcattcaaggtaaattgatggcatctctt
gataatttaaatccaatctttatgatgagtgattccggagctcgtggtaatgcttccaac
tttacacagcttgctggtatgcgcggattgatggccaacccggctgggcgtattattgaa
cttccgattaaatcttctttccgtgaaggattgacagtacttgaatacttcatctctacc
cacggtgctcgtaaaggtcttgccgatacagcactgaaaacagccgattctggttactta
actcgtcgtttagttgacgttgcacaagatgcaattgtccgcgaaaatgactgtggaaca
gatagaggattgttggttggagcgttgatggaaggtacagaagtgattgaagagcttgat
gagcgtattgttggccgtcatgcgaagaaaacaattcgccatcctgaaacaaaagaaatt
attgtcgcaaaagacgaattaatcacacaagatttaactcgtcttattgtagaagcgggc
attaaagaagttacaatccgttctgcatttacatgtaatacaaaacacggtatttgtaag
aaatgttacggcacgaacttagcaactggagacgaagttgaagtgggcgaagcagtaggt
attattgcagctcagtcaatcggtgagccaggaactcagcttacaatgcgtacattccat
acaggtggggttgcaggagacgatattactcaaggtcttccgcgtatccaagaaatattt
gagtcgcgtaatcctaaaggtcaagcagttatttctgaaattacaggtacagttactgaa
attgaagaaattcgtgaaggtcagaaggaagtaacgtttcaaggtgatgttgaaactcgt
aaatatttagctccttataatgcgcgcattaaagttcaagtagatgacgctattgtacga
ggtgaagtattaacagatggttcaattgatccgaaacaattacttcaagtaaaagatgtt
caagctgttcaagtgtatctattgaaagaagttcaaaaggtataccgtatgcagggtgta
gaaatcggcgataagcacgtagaagttatggttcgtcaaatgttccgtaaagttcgcgta
attgaagccggagatactgaattgctaccgggttcactattggatattcaccaatttact
gaagcgaatgtaaaagcggttctagaaggtaacttaccagcgacaagccgtcctgtaatt
ctagggattacaaaagcttctcttgaaacagaatcattcttatcagccgcatctttccaa
gaaacgactcgtgtcttaacggatgcagcgatcaaaggaaaacgtgatgagctactagga
ttgaaagagaacgttattatcggtaaacttgttccagctggaacaggaatgcaacgttac
cgtcaaatcaaaattgctcaaagcgaaaaagcagcgcagcaagaaattgtcggtaccgaa
tcataa
DBGET
integrated database retrieval system
