Planococcus donghaensis: BCM40_15860
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Entry
BCM40_15860 CDS
T04451
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCM40_15860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdg03400
]
BCM40_15860
Enzymes [BR:
pdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCM40_15860
DNA repair and recombination proteins [BR:
pdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCM40_15860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ANU24721
UniProt:
A0A1C7EM69
LinkDB
All DBs
Position
80478..84011
Genome browser
AA seq
1177 aa
AA seq
DB search
MNHILQIFSEDTQTQRFIEDLKQGNDHQLISGLSGSARPIFYQTIWSELEEPLLIVTPNL
LHAQRIYDDLVRLMGEKQVHLYPAEELIAAEVSFSGPELRAHRIDTLDHMKSVGKGIYIT
PVAGMRKLLPTKEQWDYATLRIAEGEELDTDEWLLKLVAMGYSRTPMVTTPGEFALRGGI
LDIYPLNFEHPVRIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPANELVLSADQRILLA
EKLEAQLASSLKKIKADDTKALMMQHIQHDIDLLKQGETPEQLAKYASLIDTQSAFLGDY
FPGNGLVFFDELGRIQEMTDTLEREEGDWIVSLLEEGKFVHDVSLTYTFREMMSKLEQKV
TFLSLFVRTFPMVSIKKSLAFSCKPMQSFHGQMHLLKAEMERWTLGKSQIFIVAGGEERL
EKVRSVLADYDMEAVIATSSTEIQGGQIYLVDGELSTGFEMPLQRLAVITDSELFKQQPK
KKTRAQKLTNAERIKSYSEIKPGDYIVHIHHGIGRFVGIETLESGGVHKDYLHIVYKADD
KLFVPVDKIDLIQKYIASEEKEPKLHKMGGAEWKKTRTKVSAAVQDIADDLIKLYAEREA
LRGFAFSEEQDMQRQFEAEFPYEETTDQLRSINEVKRDMENERPMDRLICGDVGYGKTEV
AIRAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYPITVGLMSRFRSKKQQTETVK
GLKNGSVDIVVGTHRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYN
RVDDMTRKVEEIQQLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDI
PNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDERQTGVKKEVVPE
IEISLDVDAYIPDAYISDGYQKIQMYKRVKGIETEEEMRELQDELIDRFGDMPTETDSLL
RIARIKVWAREVGVESIKQNGKIVAVRLSEAGTSSINGGKVVEESAAYGRAVGFSMSGQQ
LVMTIDETKTKKQHPFDVLEGMMKLLPQSLREEKAIL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacattttacagatattttcggaggatacacagacacaacgatttatagaggac
ttaaaacaaggaaatgatcaccaattgatctctggtttatctggcagcgcacgcccaatt
ttttatcaaaccatctggtcggaactagaagagcctttattaattgtgacacctaactta
ttgcacgctcaacgtatatatgatgacttggtgcgtttgatgggagaaaaacaagtccat
ctttatcccgcagaagaattaatcgcagccgaagtgtctttttctggtcctgaattgagg
gctcaccgcattgatacgttagatcatatgaaaagtgttgggaaaggcatctacatcaca
cctgttgcaggaatgcgtaagttattgccgacaaaagaacaatgggattatgctacttta
cgaattgcggaaggtgaagaactcgatacagacgaatggctattaaaattggtggcaatg
gggtactctcgtacaccaatggtaactacgccgggagaatttgcgcttcgtgggggcatt
ttggatatttatccactgaattttgaacacccagtacgcattgagttgttcgatacagaa
gtagattccctgcgtctattttcagcagaagatcaacgttcgcttgaaaaagtccagtcg
ctttgtattttaccagccaatgaattggtattatcagccgatcaacgcattctgctagca
gaaaagctggaagcacaacttgcttctagtttgaaaaaaataaaagctgacgatacgaaa
gcgttaatgatgcaacacatccaacatgacattgacttattaaaacaaggagaaactcca
gagcaattggcgaaatatgcttctttaatcgatacgcaatccgcatttttaggtgattat
ttcccggggaatggattggtcttttttgatgagctcggacggattcaagaaatgacagat
acgttggaacgtgaggaaggcgattggattgtttcgctacttgaagaaggaaagtttgtt
cacgatgtttcgttaacgtatacgttccgggaaatgatgtcgaaactagaacaaaaagta
acctttttatctttatttgttcggacgttcccgatggtatccattaaaaaatcattggct
ttttcatgcaagccaatgcagtcgttccatggacaaatgcacttgctaaaagcagagatg
gagcgatggacattaggaaagtcgcaaatctttatcgtcgcagggggagaagaacgctta
gaaaaagtacgttccgtattagcggactacgatatggaagctgtaattgctacctcttct
actgagattcaaggtggtcaaatttatttagtggatggggaattatcgacgggctttgaa
atgcctttgcaacgattggctgttataacagactcggaattgtttaagcagcagccgaag
aaaaaaacacgtgcacaaaaactaacgaatgcagagcgcatcaagagctactcggagatc
aagccaggtgattatattgttcacatccaccacggaattggtcgctttgtagggattgaa
acgctcgaaagtggaggcgtgcataaagattacttgcacatcgtttacaaagctgatgat
aaattatttgtaccagtcgataaaatcgatttgattcaaaaatacatcgcttctgaagaa
aaagaaccaaaactgcataaaatgggcggcgcagaatggaagaaaacccgcacaaaagtt
tcggctgccgttcaagacattgctgatgacttgatcaagctgtatgcagaacgtgaagca
ttgagaggctttgctttttccgaagaacaagacatgcaacgccaatttgaagctgagttt
ccatacgaagaaacaactgatcaattgcgttccattaatgaagtgaaacgtgacatggaa
aatgaacgaccgatggatcgtctcatctgtggggatgtcggctatgggaaaactgaagtg
gccattcgtgcagcatttaaagcagtgctcgacggcaagcaagttgcgtttcttgtgcca
accacaattttagcgcagcaacattttgaaacaatgagtgagcgatttaaagattatccg
attacggttgggttgatgagtcgtttccggtcgaaaaaacagcaaacagaaacggttaaa
ggcttaaaaaatggatcagtggatattgttgttggtacacaccggattttatcaaaagac
atgcattataaagacttaggcttattaatcattgatgaagaacaacgttttggtgtgacg
cataaagaaaagatcaagcaaatgaaaaccaatgtagatgttttaaccttaacagcaacg
ccaattccgcgaacgctccatatgtcgatgattggtgtacgcgatttgtcagtgattgaa
acgccaccagccaatcgctttcctgtacaaagttatgtgatggaacataatggtgcgctt
gtgcgcgaagcaatcgaacgcgaaatggcacgtggtggtcaagtgttttatttgtataac
cgtgtggatgatatgacacggaaagtagaagaaattcaacaattggtaccggaagctcgc
gttgggtatgcgcatgggcaaatgagtgaaacagaactcgaatcggtcattttgagtttc
ctagatggtgattacgatgttttagtaacaacgacgattatcgaaaccggcattgatatt
ccaaacgttaatacattgattgtttacaatgccgatcgaatgggcctatcgcagctgtat
caattgcgtgggcgcgttggacgttcgagtcgagtggcgtatgcgtattttatgtatcag
cgggataaagtgttaactgatgtagcagaaaaacggttgatggccattaaagaatttaca
gagcttggttcagggtttaaaatcgctatgcgcgacttaacaatacgcggggcggggaat
ttgctcggttcccaacaacacggctttattgattcggttggttttgatttgtattcgcaa
atgctgcaagaagcaattgatgaacgtcaaacaggcgttaaaaaagaagtagtgccggaa
attgagatttcactcgatgtagatgcttatattccagatgcttatataagtgatggctac
caaaagattcaaatgtacaaacgggtcaaaggcattgaaacagaagaagaaatgcgtgag
ttgcaagacgaattgatcgatcgatttggggatatgccaactgaaacggatagcttattg
cgcattgcacgcataaaagtgtgggcgcgcgaagtcggggtagaatcgatcaagcaaaat
ggcaaaattgttgcggttcgtttaagtgaagcaggtacctcgagtatcaatggaggaaaa
gtcgtcgaagaatctgccgcatatggtcgcgcagttggatttagtatgtcgggtcagcaa
ttggttatgaccattgatgaaactaaaaccaaaaaacagcacccatttgatgttctcgaa
ggcatgatgaaactcttgccacaatcgctacgtgaagaaaaagcaattttgtaa
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integrated database retrieval system
