Paenibacillus donghaensis: B9T62_04835
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Entry
B9T62_04835 CDS
T04971
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9T62_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdh03019
]
B9T62_04835
Messenger RNA biogenesis [BR:
pdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B9T62_04835
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ASA20182
UniProt:
A0A2Z2KH65
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All DBs
Position
complement(1160447..1162114)
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AA seq
555 aa
AA seq
DB search
MNMPEDRLTIAALGGVNEIGKNMYFLQYADDIIVIDCGSKFPDESLLGIDLIIPDVTYLL
NNVDKLRALIVTHGHEDHIGGIPYLLKQLDIPLYASRLTLGLIENKLKEHNLLRQTSLHC
IDGESILTFGSITTTFFKTNHSIPDCLGVVFDTPEGTVVHTGDFKFDMTPVNNQYPDIHK
MADIGKNGVKFLLSESTNAERPGFTPSERLVGAHMEEAFQKAEQRIFVSTFASNVARLQQ
IVDAAIKTGRKLTLLGRSMVNVVGVSQELGYLSIPDGMLVEPADAAKLPSHEIAVLCTGS
QGEPMAALSRLANSSHRIMEIGAGDTVLLAANPIPGNERNVSRIIDNLYLLGARVIYGSR
SELHVSGHGSQEELKLMLTLMKPEYFIPIHGEYRMLHHHRLLAEAVGVDEDHIFILKNGE
LVESKAGVVRQSGSVPAGQIFVDGLGIGDIGNVVLRDRRQLSADGVLITVITLSQTDGRM
LNEPDTISRGFVYIRNSDKLMEEINQMVTDTLHNMSHADLRQWNIMKQTLKIALGKFLYE
KTKRRPMILPIIIEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgccagaggatcggttgactattgcagcattgggaggcgtgaatgaaattggg
aaaaacatgtacttcctacaatatgccgatgatattattgttattgattgcggatccaaa
tttccggacgaaagtttgcttggcattgaccttatcattccagatgttacttacttattg
aacaatgtagataagttaagggcactgattgttactcatgggcatgaagaccatattgga
ggtattccctaccttcttaaacaattagacattccgctgtatgcctcccgtctcactctg
ggcttaattgaaaataagcttaaggaacacaatcttctccgtcaaaccagtctacattgc
atcgatggggaatccatcctcaccttcggttccattacaactaccttctttaagaccaat
catagcattcctgattgcctcggggtcgttttcgatacccccgaaggaaccgttgtccat
acaggcgatttcaaattcgacatgactcctgttaataaccagtatccggatatacataaa
atggccgacatcggcaagaatggcgttaaatttctgctctcggagagtacgaatgccgaa
cgccccggattcactccctcagagaggcttgtgggtgcccacatggaggaagcttttcaa
aaagcagagcaaagaatattcgtatccacctttgcctctaatgtagctcgtctgcagcaa
attgtggatgctgccattaaaaccggacgtaagctcaccttgcttggccgcagtatggtg
aacgtggttggcgtgtctcaagagttggggtatttgagcattccggacggaatgttggtt
gaaccggcggatgcggctaagctgccttcccatgaaatagccgtcctgtgcacgggaagc
caaggcgaacccatggcggcattatcccgtttggctaactctagccatagaatcatggaa
attggggcgggagataccgtgctcctcgcagcaaatcccataccaggcaatgaacgcaac
gtgtctcggattattgataatctttatcttcttggagcacgtgtcatttatggatcacga
agcgaactccatgtttcaggacatggcagccaggaggaattaaagctaatgctgaccttg
atgaaacctgaatatttcattccaattcatggggaataccgcatgcttcatcatcaccgt
ctattggcagaagctgtcggagtcgatgaggatcatattttcattctaaaaaatggagag
ttggttgaatcgaaagccggagttgtccgccaatcaggctcggtgccagctgggcaaatt
tttgtggatggccttggaatcggcgacattgggaatgtggtattgcgagatcgccgtcaa
ttgtccgcagatggtgtcctgatcactgtcatcaccttaagccaaacagatggtagaatg
ttgaatgaacccgatactatctcccgaggattcgtttacatcaggaactcggacaagcta
atggaagaaatcaatcaaatggtaacagatacccttcacaatatgagccatgcggatctg
agacagtggaatattatgaaacagactctcaagattgctctagggaagtttctttatgaa
aaaacgaaacgtcgccctatgatccttcccatcattattgaagtgtga
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