Paenibacillus donghaensis: B9T62_28705
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Entry
B9T62_28705 CDS
T04971
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B9T62_28705 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdh03021
]
B9T62_28705 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdh03400
]
B9T62_28705 (rpoC)
Enzymes [BR:
pdh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B9T62_28705 (rpoC)
Transcription machinery [BR:
pdh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B9T62_28705 (rpoC)
DNA repair and recombination proteins [BR:
pdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B9T62_28705 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASA24383
UniProt:
A0A2Z2KLU0
LinkDB
All DBs
Position
complement(6291693..6295304)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNNEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTCFTEEQQGALLITTVGKIIFNEIYPSSFPYINEATKSNLLQGTPEKYFIYEKG
ADVRKLIMDAPEASAVGKEYLGLIIARCFETYHTTKTSVILDKIKQLGFTYSTRSGVTVA
VSDVIVPEEKVTILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDELTNVLLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFMVARIQDGKEVIEDL
YDRIEGRYCFETVRHPQSGEVLVHRNDLIDSDKAEAIVNAGITKLQIRSVLSCRARHGVC
KKCYGRNLATGKYVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IDAGDTTLLPGAFADIHEYEAANKEAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRNVKLSDPNAQSKKEALETV
PAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgaatttatgaaaatcgggcttgcttccccggaaaaaatt
cgttcttggtcccgcggagaagttaagaaaccggaaaccattaactaccgtacactgaag
ccagagaaagaaggactgttctgcgaacggatcttcggacctcaaaaggactgggaatgt
cattgcggtaaatacaaacgcgtccgttataaaggcgtagtctgcgaccgctgcggcgtg
gaagttacccgggccaaagtccgtcgtgaacgtatgggacacatcgaattggcagctccg
gtatctcacatctggtatttcaaaggtattccaagccgcatgggtctggctctggacatg
tcccctagatcactggaagagattatctacttcgcttcttatgttgtaactgatccaggt
gaaacacctttggagaagaaacaattgctgtccgagaaagaataccgcagctaccgtgag
aaatacggctacggattccaggcaggcatgggtgctgaggctgtgaagaagttgcttcag
gatatcgatattgataaagagctggaattcctcaaagaagagctgcgtacggcacaaggc
cagcgccgcaaccgggcgatcaaacgcttggaagtcattgaagcattccgtaactccggc
aacaagcctgattggatgatcatggatgtgctcccggttattcctccggagcttcgcccg
atggtccagttggatggtggccgttttgctacgtccgatttgaacgatctgtatcgccgt
gtaattaaccggaacaaccgtctgaagagacttcttgatctgggtgcgcctgatattatc
gtacagaacgagaaacggatgcttcaggaagccgttgatgctctgatcgataacggccgt
cgcggccgtccggtaaccggtcctggtaaccgtcctttgaaatcgctcagccacatgctg
aagggtaaacaaggtcgtttccgtcagaacttgctgggtaagcgcgttgactattccgga
cgttccgttatcgttgtaggtccgtatctcaaaatgtatcaatgcggacttccaaagaag
atggcactggaactgttcaagccatttgttatgaaagaattggttaacaaaggccttgcc
cacaatatcaagagtgcgaaacgcaaagtagaacgtgtaagtccagaggtctgggatgtg
cttgaagaagtaatcagagagcatcctgttctactgaaccgcgcgcctacgcttcaccgt
ctcgggattcaagccttcgaaccgattctggtggaaggtcatgcgattcgtctgcatccg
ctcgtatgtacggcttataatgctgactttgacggtgaccaaatggcggtacacgtaccg
ttgtctgctgaagcacaggcagaagcacgtattctcatgctggcatccggcaacatcctg
aaccctaaagatggcaagccggttgttaccccttcccaggatatggtccttggtacattc
tacctgactatggacaacaatgaggaaaagggaacgggtatgattctgcgtaccgtcaac
gaagcagtatcagcttaccagcgcggaaccgcaggtctgcatgctcgtgtagctattcca
gtgaaggcactaggcaagacatgcttcacagaggaacagcagggtgcgctattgatcact
acggtcggcaagattatctttaacgagatttatccaagcagtttcccatatatcaatgaa
gctacgaaatccaacttgctgcaaggtacaccggagaaatactttatctatgaaaaaggt
gcggatgtccgtaagctgatcatggatgcgccggaagccagtgcggtaggcaaagaatat
ctgggtctgattatcgcccgctgcttcgaaacctatcacacgaccaaaacgtctgtgatt
ctggacaaaatcaaacagcttggtttcacctattccacacgttcaggcgtaacggttgct
gtatcggacgttattgttcctgaggaaaaggtcaccattctaaaagaatccgaggctaag
gtagatgtggttgctaaccaatatcgccgcggtctgattaccaatgacgaacggtatgac
cgcgttattgaaatctggtcgaagaccaaggatgaactgaccaatgtcctgttgaaatcg
atggaccgctttaactccatcatgctcatggttgattcgaaggcgcgcggtaacaaatct
cagattacccagctgggcgggatgcgcggtctgatggcgactccttccggacgaatcttc
gaattgccgatcaaggcgaacttccgtgaaggtctgacggtattggagtactttatctcc
actcacggagcgcgtaaaggtcttgccgatacagcgctgcgtacagcggactcagggtac
ttgacacgccggcttgttgacgtggctcaggatgttattgttcgcgaggaagattgcgga
accgacaaaggcttcatggtcgcccgtatccaggacggcaaggaagttattgaggatctg
tatgaccgtattgaaggccgctactgcttcgagaccgtccgccatccacagagcggagaa
gttctcgttcaccgcaatgacctgatcgactccgataaggctgaagctatcgtaaatgca
ggcatcactaagctgcagatccgttcagtgctaagctgccgtgcccgtcatggtgtctgc
aagaaatgttatggccgcaacctggcaaccggcaaatacgttgagattggtgaagctgta
gggattattgcagcacaatccatcggagagccgggaactcagcttaccatgcgtacgttc
cataccgggggcgttgcgggtgatgacatcacccaaggtttgccgcgtatccaggagctg
tttgaagcccgtaaccctaaaggtcaggccacaatcagtgaaattgatggtgtaatcaag
gaaatccgtgaaaccaaggaccgtcgtgagattgaagtccagggcgaagctgaatccaag
acctactccatcacttacggttcacggctgcgtgtcagcgaaggccaggagattgaagct
ggcgatgagctgacagacggttcgattgaccctaaagaaatgctgcgtatcaaagggatc
cgtggggtacagaactacattctgcaggaagtgcagcgtgtataccgtaaccagggcgta
gaaatcaatgataagcacatcgaggtaatgatcaaacaaatgctgcgcaaaatccggatc
atcgatgctggtgatacgacgctgctgccaggtgcatttgctgatatccatgagtatgaa
gcagccaataaagaagcgattctgtccggtaaggaacctgcagtagctaagccggtattg
ctgggtattaccaaagcatcccttgagacggattcattcctgtccgctgcgtccttccag
gagactacacgtgtcctgaccgatgctgcaatcaaaggaaaagtcgacaagttgcttgga
ctgaaagaaaatgttatcatcggtaagttgattcctgcaggtacaggcatgaatcgctat
cgtaatgtgaagctaagcgatccgaatgcacaaagcaagaaagaagctttagaaacggtt
cctgctgaataa
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integrated database retrieval system
