Paenibacillus donghaensis: B9T62_32335
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Entry
B9T62_32335 CDS
T04971
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B9T62_32335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdh03400
]
B9T62_32335 (mfd)
Enzymes [BR:
pdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B9T62_32335 (mfd)
DNA repair and recombination proteins [BR:
pdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B9T62_32335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
SecA_DEAD
AAA_22
AAA_16
TniB
Motif
Other DBs
NCBI-ProteinID:
ASA26560
UniProt:
A0A2Z2KRL4
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All DBs
Position
7103314..7106838
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AA seq
1174 aa
AA seq
DB search
MLHGLIEAFSKDPDFQSVTQGITAGMKEQLISGLSGSARQIMLAALYKETERPLLVVTHN
MFSAQKMADDLQEALSSDQVLLYPANELVAAEAAVSSPETLAQRIDVLTRCAQGFRGIVV
VPYSGVRRLLPSPHVMAQAQLTVLQDGTLELDQFLMSMVEMGYERVERVENRGELSVRGG
IVDFYPMTSPLAYRVELFDDEVDSIRTFDPVDQRSIDKVRSVKITPAKEIIADQHRQRAA
SSEASALLEQQLEKMTDRQAKIRLREEIGRELEMLREGTYFPEVYKYISLLYPERTHLYD
YMPEDTLLILDEPARLLETSKQLERDEAEWNLHLLQNGKNLPELLLSVEAEVVMYQRPFQ
TLFMSIFLRQVPHVQPQNILGFISRGMQDFHGQMNVLKSEMERWQKSGVQVMMLASGEER
MERIRRVLYDYDIPEPTIVQGNLGSGFELPSIQLAVITEGELFSQKQRKARKLSKGIDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVTSKVRTSVQDIADDLIKLYAERQSAQGYGFEKDTQ
EQHEFEEMFPYEETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFANHPLNIQVLSRFRSRKEQNETIKAVRQGTVDVVI
GTHRLLSQDLIFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLTREAVERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPDARVGIGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVTVLGEEDTSLKEGNTVIDLS
IDAYLPSEYIYDSIQKIEIYKKVAAVAAFEDATELEDELLDRFGELPEAVINLLSVARLK
VYGKLYGLDSMVRRGDDVALNFHEGAVQSLDTAKLAKVGNRFERRVQFEKDAKAVIRVRT
KDLGDKELLELLEQFLEAAKECLKPKGELHNVVK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacatggtcttatagaagctttctccaaggatcccgatttccaatctgttacccaa
gggatcactgccggaatgaaggaacagctcatatcgggtctgtccggatctgccagacag
attatgctggcggcattgtataaagaaactgaacgtccattgctggttgtgacccataat
atgttctcggcccaaaaaatggccgacgatctacaggaagcgctttcttcggatcaggta
ttgctatatccggccaatgagctggtggctgccgaagctgccgtgtccagtcccgagacg
ctggcccagcggatagatgtcctcacccggtgtgcccagggcttccgcggcattgttgtc
gttccctattccggagtgcggcgtctgcttccctcgcctcatgtcatggctcaggcccaa
ctgacggttctgcaggacggaacacttgagcttgatcaattcctaatgtccatggtggaa
atgggatatgaacgtgtggagcgggtagagaaccgcggagagctaagcgtgaggggcggg
attgttgatttctatccgatgacctctccgctagcttaccgggtggaactgttcgatgat
gaagtggattcgatccgcacttttgatccggtggaccagcgttccattgacaaggttcgc
agtgtgaagattactccggccaaggagattatcgcggatcagcaccgccagagggcggct
tcgtcagaggcttcagccctcctggagcaacagttagagaagatgaccgaccgccaggcc
aagatccggctgcgtgaagagatcggccgcgagctggagatgctgcgcgaaggaacttat
tttcctgaggtctataaatatatcagtctcttatatccggaacgaactcatttgtatgat
tatatgccagaggacacgctgctcattctggatgagccggccagactgctggaaacgtcc
aagcagctggagcgggatgaagcggaatggaatctgcatctgctgcagaacggcaagaac
ctgcctgagctgctgctctcggtcgaagctgaggtagtcatgtaccagcgtccgttccag
acgctgttcatgtcgatcttccttcgacaggttccgcatgtgcagccccagaatattctc
ggtttcatcagccgtggtatgcaggatttccatggccagatgaatgtgctgaaatcggaa
atggaacgctggcagaagtccggtgtgcaggttatgatgcttgccagcggtgaggaacgg
atggagcggatccgccgggtgctgtatgactacgacattcctgagccgaccattgtccag
gggaatctgggctcgggcttcgagctgccctctatccagctggcggtcattaccgaaggc
gaattgttctcccagaagcagcgcaaggcacgcaagctatccaagggaattgacaacgcg
gaacggatcaagagctatacagagctgaagataggcgattatgtcgttcaccagaatcac
gggatcggcaagtatatgggcataggcacgctggaggttagcgggattcaccgtgactat
atgcatattctctatgctggaggcgacaagctgtctgttcctattgagcagattgacctg
attcagaaatatgtcggttcggaagacaaggagccgaaggtatacaagcttggcggcaac
gaatggacccgggtgacaagcaaggtccgcacttcggtgcaggatattgcagatgacctg
atcaagctatatgcagagcgccagagtgcccagggatacggcttcgagaaggacactcag
gaacaacacgaattcgaagagatgttcccgtatgaggagacccgcgatcagctgcgggca
attgaggaaatcaagaaggatatggagcagaaccggccgatggaccgtctgctgtgcggt
gacgtgggttacggcaaaaccgaggtggccatccgggcagcattcaaatcggcgattgaa
ggcaagcaggtagctgtgcttgtgccaacaacgattctggctcagcagcactatgagacc
ttccgcgagcgtttcgccaatcatccgctgaacattcaggtgctcagccggttccgcagc
cgcaaggaacagaacgagacaatcaaagccgttcgtcagggaaccgttgatgtcgtgatc
ggtactcatcgcctgttgtcccaggatctgatcttcaaggatctgggcttgctcattgtc
gatgaggaacagcgattcggcgttacccacaaggaaaagctgaagaagcttaagaccaat
gtcgatgtgctcacgctgacagcgacgccaattccgcgtacgctgcatatgtccatgctg
ggcgtgcgcgatctgtcagttatcgagacgccgccggagaaccgtttcccggtgcagacc
tatgttgtggagcacagccagacccttacccgtgaagccgttgagcgtgagctggcccgc
gggggccaggtgtattacctgtataaccgcgtccagggcattcaggaaatggctgcccaa
atctcgatgcttgttccggatgcccgggtcggcattggacacggacagatgtctgaatcc
gagctggaaaagaccattctcgacttccttgacggtgaatacgacgtgcttgtcagtaca
agcatcattgagacaggtgtagatattcccaatgtaaatacgctgatcgtacacgatgcc
gacaagatgggtctatcccagctgtatcagctgcgcgggcgtgtaggccgttccaaccgg
attgcttacgcctatttcacttatcagcgtgataaggtgctgacagaggtggccgagaag
cggctgcagtcgatcaaggaattcaccgagcttggctccgggttcaagatagccatgcgc
gatttgtcgatccgcggcgcaggaaatctgcttggcgccgagcagcatggcttcatcgcc
tcggtcggcttcgatctctattcacagatgctggctgaggagatccgcaagcgtaaggta
accgtattgggcgaagaggatacttcactcaaggagggcaacacggtcattgatctgtcg
attgatgcctacctgccatcggaatatatctatgacagcatccagaagatcgagatttat
aaaaaggtagctgctgttgctgcatttgaggatgccacagagcttgaggatgagctgctg
gaccgcttcggtgagcttcccgaggctgtaatcaacctgctgtctgtggcccgcctgaag
gtctacggcaagctgtatggcctggattccatggtcagacgcggtgacgatgtagccttg
aacttccacgaaggagctgtccaatcgctggacaccgccaagctggccaaggttggcaat
cgttttgaaagacgtgtacaatttgagaaggatgccaaagcggtcatccgggtcagaacc
aaggatctgggcgataaagagctgctggagctgctggagcagttcctggaagcggccaaa
gaatgtttgaaaccgaaaggagaactacacaatgtcgttaaataa
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