Parabacteroides distasonis: BDI_0939
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Entry
BDI_0939 CDS
T00549
Name
(GenBank) putative helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03420
Nucleotide excision repair
pdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDI_0939
03430 Mismatch repair
BDI_0939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdi03400
]
BDI_0939
Enzymes [BR:
pdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDI_0939
DNA repair and recombination proteins [BR:
pdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDI_0939
MMR (mismatch excision repair)
Other MMR factors
BDI_0939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABR42707
UniProt:
A6LAJ3
LinkDB
All DBs
Position
1087220..1089562
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AA seq
780 aa
AA seq
DB search
MNVEEYLNQLNESQREAVVYNEGPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALT
FTNKAAREMKERIAAITGDQTARRLWMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSK
SLLKSIIKEMQLDDKVYRLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREI
YKRYQSRCLQAGAMDFDDLLLQTNILFRDHPAVLEKYRNFFRYVLVDEYQDTNFAQHLIV
QRLCERHGHICVVGDDAQSIYSFRGANIDNILQFKNLYTGCRIFKLERNYRSTQNIVNAA
NSLIDKNTRQIPKTVYSEKEAGNKVSVFTSYSDYEEGYTVAARINEMHGILGKFSYADFA
ILYRTNAQSRILEEALRKRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRII
NYPTRGIGDTTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIE
ENKKLSAEELATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQ
VAMSDFLAEVSLLTDQDNDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKD
NPRAVEEERRLFYVAITRAEQNCVLSYAKSRYRNGKTDMCTPSRFLKDIDAKYLDMPSDA
GASDAFASARERYGRPAFASPFRQPRAVEDDFVSPVKQAAQRQGHLTKLKNTMESSFSAA
PATDLSGLHVGSKVRHDRFGEGEIVSIEGEGGNAKATVAFDHFGQKQLLLKFAKLTMLND
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggaagagtatttgaatcaactgaatgagagccagcgggaagcggtggtttac
aatgaggggccatccttggtcgtggccggggctggctccggtaagacaagggtactgacc
tataagatcgcttatttattgcaattgggattgcctccctatagtatcttggcgctgacc
tttaccaataaggcggcccgggagatgaaagagcgtattgcggccatcaccggtgaccaa
acggcccgtcggctatggatgggaacgttccattccatcttctcccgtattttacggaac
gaggcggagcatatcggttatccttccaatttcacgatttatgacgccactgattccaag
agcttactgaaatccatcatcaaggaaatgcaattggacgataaggtgtaccgcctagga
atggtgcagagccggatctccaatgcgaagaactccttgataacttatacggcctacgag
caaaataaagagctcgtggaaagcgatatgaacgccaaggtccccttgctccgggaaatc
tacaaacgttaccagagccgttgcctgcaagcgggagcgatggatttcgacgacttgttg
ctgcaaaccaatatcctgttccgggatcatccggccgtcttggagaaataccggaacttc
ttccggtatgtattggtggatgagtatcaagatacgaacttcgcccaacacttgatcgtg
caacggctttgcgagagacacggccatatctgcgtggtaggggatgacgcccagagcatc
tattccttccgaggcgctaatatagataatatcctgcaattcaagaatctttataccggt
tgccgtatcttcaagctggaacggaattaccgttccacccagaatatcgtgaacgctgcc
aatagcttgatcgacaagaatacacgtcagatacccaaaacggtctattccgagaaagag
gcgggcaacaaggtgagtgttttcacctcgtactccgattatgaggagggctacaccgta
gccgcccgaatcaacgagatgcacgggatattagggaaattctcgtatgctgatttcgct
atcttgtatcgtaccaacgcccagtcccgtatcttggaagaggcgttgcgaaagcggggc
atcccttacaagatttacggcggtttgtctttttaccagcggaaagagatcaaggacgtg
atctcttacttccgcctgatcgtgaacccgcacgacgaggaggccttgaagcgaatcatc
aattatcccacccggggaatcggggatacgacggtaggtaagcttgttggcgccgctact
gaatacggggtaagtctatggaccgtgcttcaagcccccttggaatattcgctaccgata
aataatggtacagctaagaaactgagcgatttccgtagtttgattgaagttttcattgaa
gagaataaaaaactctccgcagaggaattggctaccttggtggtgaagcgtagcggcatc
gtttccgacctgtttcaagaccgttccgtagagggcgtgagcaagcaagagaacttgcag
gagttgctgaaaggtatcgctgagttttgcgagatccggcgtgaggagggcatggagcaa
gtcgccatgtccgacttcttggcggaggtatccttgctcaccgatcaagataacgataaa
gaggaaaactccgataaggtcacgatgatgaccgtacatgccgccaagggattggaattc
acgaatgttttcgtggtaggcttggaggaagacctattcccctcgtccctgtcgaaagat
aacccgagagcggtagaggaggagcgtcgtttgttctacgtggcgattacccgtgcggag
caaaattgcgtattgagctatgcgaagagccgctatcgtaatgggaagacggatatgtgt
acgcccagccgtttcttgaaggatatagacgctaagtatctggatatgccttcggatgcc
ggcgcttcagatgcattcgcctcggcccgtgaacgctacgggcgcccggcttttgcctct
ccattccggcaaccaagggcggttgaggatgatttcgtgtcgccggtgaagcaagcggca
cagcgtcaagggcatcttacgaagttaaaaaacacgatggaatcgtccttttcggcggct
ccagccacagatctatcggggttacatgtgggttccaaggttcgccatgatcgttttggg
gaaggtgagattgtctcgatagaaggagagggtggtaacgcaaaggctacagtggccttc
gatcatttcggacaaaagcagttacttttgaagttcgctaaactcactatgttgaatgat
tga
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