Parabacteroides distasonis: BDI_1398
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Entry
BDI_1398 CDS
T00549
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDI_1398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdi03021
]
BDI_1398
03019 Messenger RNA biogenesis [BR:
pdi03019
]
BDI_1398
Transcription machinery [BR:
pdi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BDI_1398
Messenger RNA biogenesis [BR:
pdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BDI_1398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
OB_RNB
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ABR43156
UniProt:
A6LBU2
LinkDB
All DBs
Position
complement(1624387..1626369)
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AA seq
660 aa
AA seq
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MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKMKEK
EAKKPVEGRKRGRPAKAASPKVAKAETAEAAESAQQASEKPVAAPADKKEQKEQPERKKR
VRIEKKEKVAGAIAPSEDNKEVVVSKEPQTISMVTEISAVETPAVVESPVEKPLLPPVVA
ELETEEEAALPENTTPVEVAEETTSPQATEEEPKRIVFRHPDAKSVLDQIFPFSAPKPEA
NKPQPEAAPQQNNPRQNNRQNNHNNNRNNNNANNNQQAQEKMYEFDGILTGTGVLEMMQD
GYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGEKYFPLVKVDKIN
GRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDNIAVRVVDLFSPIGKGQRGLIVA
QPKTGKTMLLKDIANAIAYNHPEVYMIILLIDERPEEVTDMARSVDAEVIASTFDEPAER
HVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPK
RFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFKGTGNMELQLDRKLANKRIYPAV
DITASSTRRDDLLQDESTLNRMWVLRKYLSDMNSMEAMEFVKQRMEQTVDNMEFLASMNG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatataacattctagaactaaatgaaaaacttcttcccgaacttcaaagtatc
gcggaagagttgggaataaaaaaagttagcagcttaaagaaagaagagttggtttatcgg
attcttgatgagcaagcgatctcctatgccggcattcaggctgaaaagatgaaagagaaa
gaggctaagaagcctgtagagggccgtaagagaggccgtccggctaaagccgcttctcct
aaagtggcgaaggctgagactgccgaagctgcagagagtgcccaacaggcttcggaaaag
ccagtggctgctccggctgacaagaaagagcaaaaagagcagcctgaacgtaagaaaaga
gtccgtatcgagaaaaaggaaaaggtagcgggcgctatcgctccttccgaggataacaag
gaagtggtggtttcgaaagagccgcaaacgatctctatggtaacggaaatctcggccgtg
gaaactccggcggtagtagagagcccggtggagaaaccgttgttgcctcctgttgtggcg
gaacttgaaacggaagaagaagccgctttgccggaaaatacgactccggtagaggtagcg
gaagaaaccacttcaccacaagcgacggaagaagagcctaagcgcatcgtatttcgccat
ccggacgctaaatccgtattggatcagattttcccgttctccgctccgaaacccgaggct
aacaaacctcaacccgaggccgctccccagcagaataatcctcgacagaacaatcgacag
aataatcataataacaaccgtaataacaataacgctaataacaaccagcaggctcaagag
aaaatgtatgagtttgacggcatccttacaggaaccggcgtgttggagatgatgcaagat
ggttacggtttccttcgttcttcagattataactatttgacttcaccggacgatatttat
gtctctcaatcccagatcaagttatttggcttgaaaacgggtgacgtggtagaaggctcg
attcgtccgccgaaggaaggtgagaagtatttcccgttggtgaaagtggacaagatcaat
ggccgtacgccggaagaggttcgcgaccgggttcctttcgatcatttgaccccgttattc
ccggatgagaaattcatgcttacggcacgtaaatcaccgaaagtatacgataatatcgcc
gtacgtgtggttgatttattctccccgatcggaaaagggcaacgtggtttgatcgtcgct
caaccgaaaaccggtaagacgatgttgctgaaagatatcgcgaacgctatcgcttacaac
catcccgaggtttatatgattatattattgatcgacgaacgtccagaggaggttacggat
atggctcgtagcgtggatgcggaagtaatcgcttctacattcgacgaaccagctgaacgt
cacgtgaaaatcgctgagatcgtattgaacaaggcgaaacgaatggtagaatgtggtcat
gatgtcgtgattcttcttgactcgatcactcgtttggctcgtgcttataatacggtacaa
ccggcttccggtaaggtgctttccggtggtgtggacgcaaatgcgttgcagaagccgaag
cgtttcttcggtgccgcccgtaatattgagaatggcggtagccttacgattctagccacc
gcccttacggagactggctctaagatggacgacgtgatcttcgaggaattcaagggtacg
ggtaatatggagttacaattggatcgtaaattagccaataaacgtatctatccggctgtg
gatatcacggcttccagcactcgccgtgatgatttattgcaggatgagagcacgttgaac
cgtatgtgggtcttacgcaaatatctatcagacatgaactctatggaggctatggaattt
gttaagcaacggatggaacaaaccgttgataatatggaattcttggcatccatgaacggt
tga
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