Parabacteroides distasonis: BDI_1746
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Entry
BDI_1746 CDS
T00549
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03410
Base excision repair
pdi03430
Mismatch repair
pdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BDI_1746
03430 Mismatch repair
BDI_1746
03440 Homologous recombination
BDI_1746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdi03400
]
BDI_1746
DNA repair and recombination proteins [BR:
pdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BDI_1746
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BDI_1746
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BDI_1746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
SOGA1-2-like_CC
zf_Tbcl_2
Toprim
Motif
Other DBs
NCBI-ProteinID:
ABR43493
UniProt:
A6LCS9
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All DBs
Position
2069673..2071397
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AA seq
574 aa
AA seq
DB search
MINKWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLHDP
FLMPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYD
EGYGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAV
AVLDAKRSDSIYPYEHLSGCGVGFKFMQAFAKSNNFPFSDLEKLLELTAVSIASDIVPIT
GENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMNGKE
AVELLLSKDSASAREKSESINQYNEERRELDKKITDEANAVIDEVENMDDRKAIVVYNPG
WHKGVIGIVASRLTEKYYRPAVVLTKSSELITGSARSVTGFDIYKAIESCRDLLENFGGH
TYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFVNDLKKMS
PFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMHRYNDHIK
GMKPFNICYTVEENTYNGNTSIQLMIKDIKPDDI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgattaacaaatggaactttcaaaccccatcagaagaagagttacataagagagaccaa
ttggtggctgaattaggattcagcccggtgatctgtctcttgctcgttcaacgaggtatc
acttcgatcgaagaggcgaagaaattctttaaacccagcttgaacgatttgcacgacccg
ttccttatgccggatatggataaggcggtgaggcgcttgaacaaagccttagggaataaa
gaaaagattttgatctacggcgattacgacgtggatggaacgacagcggtatcgctcgtc
ttcaagtatttaagaccttactcgtctaccttggatttctatatcccggaccggtacgac
gaggggtacggtatctcttacaagggtatcgattatgccgccgagaacggcgtgtcgctg
gttatctcgctggattgcggtatcaaagcgatcgagaagatcgagtacgccaaggagaaa
ggcatcgactttattatttgcgaccaccatatgccggacgccactttgccggacgctgtc
gccgtattggatgccaagcgctcggattctatctatccgtatgagcatttatcgggttgc
ggagtgggattcaagttcatgcaggcgttcgccaagagcaataatttcccgttctcggat
ctggagaagttgttggagctgacagcggtcagtatcgcctcggatatcgtcccgattacg
ggagagaaccgcatcctcgcctattacgggctgaagcaattgaacagcaaccccagcctc
gggctgaaagggattatcgatatctgcggattgaccggaaaggagatcacgatcagtgat
atcgtcttcaagatcggtccccgtatcaacgcttccggccgtatgatgaacgggaaggag
gcggtggaactgctactgtccaaggatagcgccagtgcccgggagaagagcgagagcatc
aaccaatataatgaggaacgccgagaattggacaagaagatcaccgacgaggctaacgct
gtcatcgacgaagtagagaacatggatgaccggaaggcgatcgtggtgtataacccggga
tggcacaaaggcgtgatcggtatcgtagcgtcccgtttgaccgagaagtattaccgtccg
gcggtcgttcttaccaaatcgtccgagttgatcaccggatcggcacgttccgtaacaggc
ttcgatatttacaaggcgatagagagttgccgggatttattggagaatttcgggggacat
acctacgccgccgggctttcccttcgggaggagaacctagaggcattcaccgagcgtttc
ttgaagatcgcatccgaggagatcataccggagcagatgatcccgcagatcgatatcgac
gctatcttggatttgaaagagatcaaccagaagttcgtgaacgacctaaagaagatgagt
ccgttcgggccggacaaccaaaagcccgtattctgttcgcttggcgtaaaggactacggc
accagtaagctcgtgggtaaggaactggagcatctcaagctggaattgatcgacggaaac
tcaagcacccccatgcacgccatcgctttcggcatgcacaggtacaacgaccatatcaag
ggtatgaagcctttcaacatctgttacacggtggaggagaacacctacaacggcaacacc
tctatccagctgatgatcaaagacatcaaacccgacgatatatga
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