Parabacteroides distasonis: BDI_2394
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Entry
BDI_2394 CDS
T00549
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDI_2394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdi03019
]
BDI_2394
03400 DNA repair and recombination proteins [BR:
pdi03400
]
BDI_2394
Enzymes [BR:
pdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDI_2394
Messenger RNA biogenesis [BR:
pdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDI_2394
DNA repair and recombination proteins [BR:
pdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BDI_2394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
RecQ-1-like_HTH
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
HHH
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABR44119
UniProt:
A6LEK5
LinkDB
All DBs
Position
complement(2805297..2807477)
Genome browser
AA seq
726 aa
AA seq
DB search
MAKKDHLTEELNRHFGFGTFKGNQKAIIENVLAGKDTFVLMPTGGGKSLCYQLPSILMEG
TAIVISPLIALMKNQVDAMRNFSEEDGVAHFINSSLNKSAIDQVKSDILSGRTKLLYVAP
ESLTKEENVDFLRQVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRPLIALTAT
ATPKVQHDIQKNLGMIDATVFKSSFNRSNLYYEVRPKGTNIDREIIKYIKANEGKSGIVY
CLSRKKVEEFADILKANGIKALPYHAGMDSQVRSANQDAFLMEQADVIVATIAFGMGIDK
PDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLEKFMQGKPVAEQEI
GKQLLLETAAYAETSVCRRKVLLHYFGEEYLEDNCGNCDNCLNPKKQVEAKELLSAVLEV
ISTLKEKFKADYIVNILVGNETSEIQNYKHNELEVFGSGQDEDDKTWNAVIRQALIAGYL
AKDIENYGLLKITEKGKEFMKKPVSFKITEDNEFEEEEEEVPVRGGASCAVDPVLYSMMK
DLRKKLSKRLEVPPFVIFQDPSLEAMATTYPITLDELQNIPGVGAGKAKRYGKEFIELIK
KHVEENEIERPEDLRVRTVANKSKLKVSIIQRIDRKVALDEIALTNGLEFTELLDEIEAI
VYSGTRINIDYFLNDVMDEDHIEDIYEYFKDSETDGLEDAIEELGGDYTEEEIRLVRIKF
LSEMAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaggatcatttaacagaagagctaaatcggcactttggcttcggtaccttt
aaggggaaccagaaggctattattgagaacgtgctggccgggaaggatacttttgtatta
atgccgacggggggaggtaaatctctttgttatcaattaccatccatactaatggaagga
accgcgatcgtgatatctccgttgatcgctttgatgaagaatcaggtggacgcgatgcgg
aatttcagtgaggaagatggggtcgcccattttatcaattcctctttgaataagtcggct
atcgaccaggtgaaatcggatatattatcaggacgtaccaagttgctgtatgtagcaccg
gagtccttgaccaaggaagagaacgtggattttctgcgtcaggtaaagatctctttctat
gcggtggacgaggcgcattgtatctcggaatggggacatgatttccgtccggaatatcga
agaatccgtccgattatcaatgagatcggtaaacgtccgttaatcgctctgaccgctacc
gctacacctaaggtgcagcacgatatccagaagaatctgggtatgatagacgctacagtc
tttaaatcatccttcaaccgctctaatttgtattatgaggttcgtccgaaaggaacgaat
atagaccgcgagatcattaagtatattaaagccaacgagggtaaatcgggtatcgtatat
tgtttgagccgtaaaaaggtggaggaatttgccgacatcttgaaagccaacgggataaag
gcgttgccttaccatgcgggaatggattcgcaagtacgttccgccaatcaggatgccttc
ctgatggaacaggcggatgtgatcgtggctacgatcgctttcggtatgggtatcgacaag
ccggatgtccgttatgtgattcattacgatatcccgaagagcctagaaggttattaccag
gaaaccggtcgtgccggtagggatggcggagaaggccaatgtatcgctttctatgcttat
aaggacttgcaaaaattggagaaattcatgcaaggaaagcccgtggccgaacaggaaatc
ggcaaacagttgcttttagagactgcagcctatgccgagacttccgtctgccggagaaaa
gtgctattgcattatttcggtgaggaatacctggaagataattgtggtaattgtgataat
tgtttgaacccaaagaagcaggtggaagcgaaggaattgttaagcgcggtactggaggtt
atcagtacgttgaaagaaaagtttaaggcagattatatcgtaaatattttggtaggtaac
gaaacctccgaaatccaaaattacaagcacaatgaattagaggtcttcggttccggacag
gacgaggatgataaaacttggaacgccgttattcgtcaggctttaatcgctggctattta
gcgaaggatattgagaattatggtttgctgaaaatcacggaaaaaggtaaggagttcatg
aagaagccggtatcgttcaagattaccgaggacaatgaattcgaggaagaggaagaggaa
gttccggttcgtgggggcgcctcttgtgcggtagacccggttctttattccatgatgaag
gatttgcgtaagaaattatccaagcggttggaagttccgcctttcgtgattttccaagat
ccctctttggaggctatggctactacttatccgatcacgttggacgagttgcagaatatc
ccgggagtgggcgctggtaaggcgaaacgttatggcaaggagttcattgagttgatcaag
aaacatgtagaggagaacgagattgagcgtccggaggatttgcgcgtacgtacggtcgct
aataagtccaagttgaaggtctcaatcattcagcggatcgaccgtaaggtggcgctggac
gagatcgcgttgactaacggacttgagttcaccgagcttttggatgagatcgaggcgatc
gtatattccggtacacgtatcaatatcgattatttcttgaatgatgtgatggatgaggat
catatcgaggatatttacgagtatttcaaggattcggagaccgacggtctggaagacgcc
attgaggaattaggcggtgactatacggaagaggagattcgcttggtccgtatcaagttc
ttgtctgaaatggcaaactaa
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