Parabacteroides distasonis: BDI_3344
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Entry
BDI_3344 CDS
T00549
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDI_3344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdi03019
]
BDI_3344
03016 Transfer RNA biogenesis [BR:
pdi03016
]
BDI_3344
Enzymes [BR:
pdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BDI_3344
Messenger RNA biogenesis [BR:
pdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BDI_3344
Transfer RNA biogenesis [BR:
pdi03016
]
Prokaryotic type
tRNA degradation factors
BDI_3344
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
S1CSD-TOTE-2
Mnd1
Motif
Other DBs
NCBI-ProteinID:
ABR45048
UniProt:
A6LH84
LinkDB
All DBs
Position
complement(4052763..4054949)
Genome browser
AA seq
728 aa
AA seq
DB search
MAKNRPAKKDNNKEKKGKKEKGVGKRMKKEAMIQAIISVFQSSPKEPFNYKQISKIIGVE
NQVQKLQVVDILYDLSAEDIITEIDRGRYRLNGLGTLAVGTFARRSNGKNSFIPEDGGTP
VFIAERNSGHAMDGDKVKVQLFAKRKGAEPEGEVVEILESKERTFVGKLQVAKGFAFLIT
ENKTLANDIFIPKDKLKGGKNGDKAIVRIVEWPDEAKNPLGEVIDILGIAGQNTAEMHAI
LAEFGLPYKYPSSVEKAADKIPEAISPEEIENREDFRGITTFTIDPKDAKDFDDALSARR
LDNGNWEVGVHIADVTHYVKTDGVIDKEAQSRATSVYLVDRTIPMLPERLCNQICSLRPD
EEKLCFSAVFELNSDAVVQNSRICRTIIKSDRRFTYEEAQEVIETGEGDYKEEILALNDL
AKKLRERRFKSGAINFDRYEVKFEIDEQGKPVRVYFKVSKDANKLIEEFMLLANRTVAEF
VGRPPKGKTKKTFVYRIHELPDPDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNV
QGKPEENLIETVAIRAMQKARYSTENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYL
AGGRSVIQKKYEDLCDHCSSMEQVAANAERASIKYKQVEFMQDKLGMAFDGVISGVTEWG
LYVELNENKCEGLVPIRDLDDDYYEFDEKNYCLLGRRKKRQYRLGDPITIKVAQANLERK
QLDFQLAE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatagaccagcaaaaaaagataacaacaaggagaaaaaaggaaaaaaggaa
aagggtgttggtaaacgtatgaaaaaagaagcgatgatccaagccatcatttccgttttc
caatcctctcccaaggaacctttcaactataaacaaatcagcaagatcatcggagtcgag
aaccaagtgcagaaattgcaggtggtagacatcctgtatgatttgtccgccgaagatatc
atcaccgagatcgaccgtggccgttaccgtctcaacggattgggaaccctagccgtagga
actttcgcacgccgcagcaatggaaagaattctttcatccctgaagacggaggtacgccg
gtatttatcgctgaacgtaattccgggcatgccatggatggagacaaagtgaaagtacag
cttttcgccaaacgtaaaggtgccgagccggaaggtgaggtcgtggaaatccttgagagc
aaggagcgtactttcgtaggtaaacttcaagtagctaaaggctttgccttcttgattacg
gaaaacaagacgttggctaacgatattttcatccctaaggataaactgaaagggggcaag
aacggcgacaaagcgatcgtacgtatcgtggaatggccggatgaagccaagaatccactg
ggtgaggtcatcgatatattaggtatcgccggacagaataccgccgagatgcacgcgatc
cttgccgaattcggattgccttacaaatatccttcctcggtagaaaaagcggcggataag
atcccggaagcgatctctccggaggaaattgagaaccgggaggatttccgggggataaca
accttcacgatcgacccgaaggacgcgaaagacttcgacgacgccctttccgcacgccgt
ttggataacgggaactgggaggttggcgtacatatcgccgacgtaacacattatgtgaaa
acggacggtgtcatcgataaagaggcgcaaagccgtgcgacttccgtttatctggtagac
cgtacgataccgatgcttcctgagcgactttgtaaccaaatatgctctttacgtcctgac
gaggaaaaattatgcttctccgctgtcttcgaactaaatagcgatgccgtggtacaaaac
tcccggatctgccgcacgatcatcaagagcgaccgccgctttacctatgaggaagcacaa
gaggtgatcgaaaccggcgagggagattataaagaggagattctagccttgaacgacctt
gccaagaaattgcgggaacgccgtttcaagagtggcgctatcaacttcgaccgttatgag
gttaaattcgagatcgacgaacaagggaaaccagtccgtgtttatttcaaggtctcaaaa
gacgctaataagttaatcgaggagttcatgctattggcaaaccgtaccgtagccgagttc
gtgggccgtcctcctaaaggaaagactaagaagacatttgtttatcgtatccatgagctt
ccggacccagataaaatggagaatttcgcctcttttatccgtcgcttcggctataagttg
aaaacagacggcacgaagacggatgtctccaaaggaatcaactccttattggacaatgta
caaggaaagccggaagagaacttgatcgagacagtggcgatccgtgccatgcaaaaggcc
cgttactccacggagaatatcggccactatggcttggctttcgaatactatacacatttc
acctctcctatccgccgttatccggatatgatggtacaccgattgctggaacgttatcta
gctggtggccgtagcgttatacaaaagaagtatgaggatttatgcgatcattgttccagc
atggagcaagtcgccgccaacgcagagcgtgcatccatcaaatataagcaagtagaattc
atgcaggataagctcggcatggcattcgacggcgttatctccggtgtcaccgaatgggga
ctttacgtagaactgaacgagaataaatgcgaggggcttgtaccaatccgtgatctggat
gatgattactatgagtttgatgagaagaattattgtttattgggccgtcgcaagaaacgt
caatatcgtttgggagaccctatcactatcaaagtagcgcaagcgaatttggaacgtaaa
caacttgatttccaattagcggaatag
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