Phyllostomus discolor (pale spear-nosed bat): 114490447
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Entry
114490447 CDS
T07739
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03008
Ribosome biogenesis in eukaryotes
pdic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114490447 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
114490447 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdic03019
]
114490447 (XRN1)
03009 Ribosome biogenesis [BR:
pdic03009
]
114490447 (XRN1)
03016 Transfer RNA biogenesis [BR:
pdic03016
]
114490447 (XRN1)
03036 Chromosome and associated proteins [BR:
pdic03036
]
114490447 (XRN1)
Messenger RNA biogenesis [BR:
pdic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114490447 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
114490447 (XRN1)
Ribosome biogenesis [BR:
pdic03009
]
Eukaryotic type
Pre-60S particles
RNases
114490447 (XRN1)
Transfer RNA biogenesis [BR:
pdic03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114490447 (XRN1)
Chromosome and associated proteins [BR:
pdic03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114490447 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
114490447
NCBI-ProteinID:
XP_028360231
EnsemblRapid:
ENSPDIG00005011160
UniProt:
A0A6J2KYD4
LinkDB
All DBs
Position
2:complement(108583636..108742407)
Genome browser
AA seq
1732 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPAEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYINILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENSVCWAALDKNREEAVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYIQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIEEKRLLEAMETCNHALTEKERKRNQHSECLM
CWYDASTEFTYPSPWPERFPAIERCCTRYKIISLDAWHVDISKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSAVQVFQQSSRGENMMLEILVNAESDELSVENVASSVLGKSVFVNWP
HLEEARVVGVSDGETKFYLEEPSGTQKLYLGRAAPPSKVVHLGDKEQSNWTKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVHLEKQWSKQVLPFVYQAIVKDIRAFD
SRFSNIKTLDDLFPPRSMVFMLGTPYYGCAGEVQDSGDVITEGRIRVVFSIPCEPSLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGNEWMYSSAAEQLLAEYIERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKIQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKHKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRNAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSESGNQKLTAIVKPQPAVNHYSS
NLSVSSGHLGVLNHSPQSIFVPSQVTTKDDDEFCNIWQSLQGSGKVQHFQPALQEKGAIL
PQEVSQVTQHHKSGLNDNSVNKYQQRKHEPHRKFKEESKSPKTESRSQKMSSNQTFGRPD
KCNTKLLKRNETPEVSENQKVGTGYPHAVDKPNTGFENFLASLNISKENEVQSSHHEELP
SEEHLSPQSFAMKGTRMLKEILKIDGSDPLDHKNKMKQFGNEVTVSSNRRDEYVPSSQPK
QNKKLTSYVNKPHSASEYHHVRSVDNVCWPASSQIPPMSTPVTELSRICSLVGMPQPDFS
FLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVSFPLPPPIFAN
YAPAVPPGTIPPVFPQPTANIMPSSSHLFGSMPWGPSVPVSGKPFHHTPHARPGPMAGAV
VGGVHSQFIPLQVTKKRVANKKNFENKEAHSPEATPLQTSQPGSSSVTKVIPQESSSASF
KSSQMTQPAPSFQVEAASQSRGVCHHKSAPSSSSRRKSRKLAVNFGISKPSE
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatttcggagcggtacccttgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacctgtacctggatatgaatggaattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactatttagaagtgttgtttcgcattattaaacctagaaaagtg
ttttttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtggaagg
cgatttaggtcagcaaaggaggcagaagacaaaataaaaaaggcaatagaaaaaggagaa
actcttcctgcagaggccagatttgattcgaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtactttgtaaatatgaaaatttctacggataagtca
tggcaaggagtcaccatctatttctcaggccatgagactccaggagaaggagagcataaa
atcatggaatttatcagatctgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgatttgattatgctaggattaacaagtcatgaagcacat
ttctcccttttaagagaagaggttcggtttggtggcaagaagacacaaagggtatgtgca
ccagaagaaaccacatttcacctcttacacttgtctttaatgagggaatatattgactat
gagttttcagtgttaaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttaatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaatatcctgccagaa
cttggaggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaattatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcgggtgttgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaaactccgtatgttgggct
gctttagataaaaatagagaagaagcagtaacttctaaggacaatttagaagatgagaca
gaagatgatgacctctttgaaactgagtttaggcaatataaaagaacatactacatgacg
aagatgggagttgacgtcgtgtctgatgactttctggctgatcaagctgcatgttatatt
caggcaatacagtggattttgcactattactatcacggagttcagtcctggagctggtat
tacccttaccattatgcacctttcctatctgacatccgtaacatcagcacactcaaaatc
cattttgaactaggaaagccttttaagccattcgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctgcatgttaccagcatttgatgaccagtgaggactcacca
attatagaatattatccacctgattttaaaactgatctaaatgggaaacaacaggaatgg
gaagctgtggtacttataccttttatcgaggagaagcgattgttggaagccatggagaca
tgtaaccacgccctcacagaaaaagagaggaaaagaaaccaacatagtgagtgtttaatg
tgctggtacgatgcaagcacagagttcacctatccctctccatggccagagaggttccct
gccatagagcggtgttgcacaaggtataaaataatatcattagatgcttggcatgtagac
ataagcaagaacaaaataacgagggttgaccagaaggcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtgcagttcaagtattccag
cagagcagtcgtggagaaaacatgatgttggaaatcttagtgaatgcagaatcagatgaa
cttagtgtagaaaatgtagcttcatcagtgcttggaaagtcggtctttgttaattggcct
catcttgaagaagctagagttgttggtgtatcagatggagaaaccaagttttacttggaa
gaaccttcagggacacagaagctctatctgggaagagctgctccaccatctaaagtggtt
catcttggggacaaagaacaatctaactggaccaaagaagtacaaggaatttcagaacac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcaatta
cttacaggtcgtaaatatcaaataaatcaaaatggtgaagttcatctagagaaacagtgg
tcaaaacaagttcttccttttgtttatcaagctattgttaaggacatccgagcttttgat
tcccgtttctccaatatcaaaacattggatgacttgtttcccccaagaagtatggtcttt
atgctgggaaccccctattatggctgtgctggagaagttcaggattcaggggacgtgatt
acagaaggtaggatccgtgtggttttcagcattccatgtgaacccagtcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaagttcaac
aaaaaaaatgaagaggtacctggatatacaaagaaagttggaaatgaatggatgtattca
tctgccgcagaacagcttcttgcagagtacatagagagagctccagaactattcagttat
atagcaaaaaatagccaagaggatgtgttctatgaagatgatatttggcctggagaaaat
gagaatggtgctgagaaaattcaagaaattattacttggctaaaggggcatcctgtcagt
actttgtctcgttcttcgtgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagcacaagcaaagaaagaataataagaaagtacgcgtgacggta
aagcctcatttgctgtacagacctttagaacagcaacacggagtcattcctgaccggaat
gcagaatttcgcctctttgaccgcgttgtgaatgtgagagagaacttctcagtgccagtg
ggccttcggggaaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggaggcttaacaataaggtgctcacctggtagg
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaagt
ggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactacagctca
aatctgtcagtgtcgtctgggcatttgggagtcctgaaccattcccctcaatcaattttt
gttccctcacaagtaactactaaagatgatgatgaattttgcaacatttggcagtcctta
cagggatctggaaaggttcagcactttcagccagctttgcaagagaagggtgcaatttta
cctcaagaagtaagtcaagtaactcaacatcataaatccggcctaaatgacaacagtgtt
aataaatatcagcaaagaaaacatgagcctcacagaaaatttaaagaagagagtaagagc
cccaaaactgagagtcggtctcaaaaaatgtcaagtaaccagacatttggacggcctgac
aaatgtaatactaagctactaaagagaaatgaaactccagaagtctcagaaaatcaaaag
gttgggactggttatccacatgctgttgataagcctaacactggatttgagaacttttta
gcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcttcca
agtgaagaacatttgtcaccacagtcatttgctatgaagggaacgcggatgcttaaagaa
attctaaaaattgatggctctgatcctctggaccataagaacaaaatgaagcagtttggt
aatgaagtcactgtttcttctaatagaagagatgaatatgtaccttcctcacaacctaaa
caaaataagaaattaacatcttatgtaaacaagcctcacagtgctagtgagtaccaccat
gttcggtctgtagacaatgtgtgttggcctgcttctagccagattcctcctatgtccaca
cctgtaactgaactttctagaatttgttcccttgttggaatgccacaaccagatttctcc
tttcttagaacaccacagacaatgacagtttgccaggtaaagttatctaatggcttactg
gtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgct
ttacaacagttgggctctttaggagtgagtttccctttgcctccaccaatatttgcaaat
tatgctcctgctgtaccacctggaaccattcctccagttttcccccaacctactgctaat
ataatgccttcatcatctcatctctttggctccatgccgtggggaccatcagtgccggtt
tctggaaagccctttcatcacactccacatgcccggccggggcccatggctggggccgta
gtgggtggtgtgcacagtcagttcatacctctgcaggttacaaaaaaaagggttgcaaac
aaaaagaactttgagaataaggaggcccacagtcctgaagccaccccacttcagactagc
cagccagggtcttccagtgtcaccaaggtgattccacaggagagttcatcagcttctttc
aagtcctctcagatgactcagcctgctccttcctttcaagtggaagctgcctctcaaagt
cgtggtgtgtgtcaccataagtcagcaccaagctcttcttcaagaagaaaatcaagaaaa
ctggctgtcaattttggcatttctaaaccttctgaatga
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integrated database retrieval system
