Phyllostomus discolor (pale spear-nosed bat): 114493799
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Entry
114493799 CDS
T07739
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X4
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114493799 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdic03019
]
114493799 (SKIV2L)
Enzymes [BR:
pdic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114493799 (SKIV2L)
Messenger RNA biogenesis [BR:
pdic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114493799 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
114493799 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
DUF3516
Motif
Other DBs
NCBI-GeneID:
114493799
NCBI-ProteinID:
XP_028364196
UniProt:
A0A6J2L9M0
LinkDB
All DBs
Position
4:104742400..104752222
Genome browser
AA seq
1246 aa
AA seq
DB search
MMERERLVLPPPDPLDLPLRAVELGCSGRWELLNIAGAPESTLPHNLLPCAPDLQQEAEQ
LFLSSPAWLPLHGLEHSARKWQRKMDPWSLLAVLGAPVPSDLQAQRHPTTGHILGYKEVL
LENTDLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
TALLTVPPGFKKGVDFAPKDYPAPAPGLLSLSSLLEPLDLGGSDEDEREAMGQPGGTRGD
PVTASPCSVPLVRASSLEDLVLKEASTIASSVEPPKTLPQEQWAIPVDVTTPVGDFYRLI
PQPAFQWPFEPDVFQKQAILHLERHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHSEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPEHVSVILLSATVPNALEFADWIGRLKRRQIYVIST
VTRPVPLEHYLFTGNSPKTQDELFLLLDSQGTFHTKGYYAALEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRRRAQLPVVVFTFSRGRCDEQAAGLTSLDLTTNSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMVDLHRMLTGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLEALEEPDLTGQLVDLSEYYIWGEELTEIRSLIQRRVIESVNGLKSLS
SGRVVVVKNQDHHNALGVILQVSSNSTGRSFTTLVLCDKPLSEDPQDRGSASPGVPYPDD
LVGFKLFLPEGPCDHTVAKLQPRDVAAITTKVLRVNGEKILEDFSKRQQLKFKQDPPVAA
VTTAVQELLRLSQAYPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIREAQCVHSPRF
PAQYLKLRERMQVQKEMERLRFLLSDQSLLLLPEYHQRVQVLQTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDTGEQLPSTLKQGVERVRA
VAKRIGEVQAACGLNQTVEEFVGELNFGLVGVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagagggagaggcttgtgctacctcccccagatcccctggacctgcctcttcgg
gctgtggagctgggatgcagtgggcgctgggagctcctcaatatagctggggctccagag
agcactcttccgcacaacctccttccctgtgccccagatctgcagcaagaagcagagcaa
ttgtttctgtcatctccagcctggctgcctctgcatggcctggaacactcagctcgaaaa
tggcagcggaagatggatccctggtctctccttgctgtactgggggccccagtcccctct
gacctacaagcccaaagacacccaaccacaggccacatactgggctacaaggaggtcttg
ctggagaatacagacctgtcagccacgacctcattatctcttcgccggccgccagggccc
atctcccagtccctgtgggggaatccaacacaataccctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcgggaggaagccgaggaggagatagactttgag
acagctcttcttactgttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
tacccagctccagctcctgggttgctcagcctcagtagtctgctagagcccctggatctg
ggtggcagtgatgaagatgagagggaggcaatgggacagccaggaggtaccagaggggac
ccagttacggcctctccctgtagtgttcccttggttcgagcaagcagcttggaggaccta
gtgttgaaggaagcttccacaattgcatcctccgtagagccccccaaaacccttcctcag
gagcagtgggccattcctgtggatgtcaccacccctgttggtgatttctaccgcctcatt
ccccagccagccttccagtggccgtttgagcctgacgtgttccagaaacaggccatcctg
cacttggaacggcacaactcagtctttgtggcagctcacacatccgcagggaagacagtt
gtggctgaatacgccattgctcttgcccagaagcacatgacacgcaccatctacacttcg
cctatcaaggctttgagtaaccagaagttccgagacttccgaaacacatttggggatgtg
ggactgctcactggggatgtacagctgcactcagaggcctcttgcctcatcatgacgaca
gagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgtggggtcgtgtgggaagaggtg
cttatcatgctccctgaacatgtctctgtcatccttctgagtgccactgttcccaatgcc
cttgaatttgctgactggattggacgactgaagcgtcgtcagatctacgtgatcagcact
gtcactcgccccgtccccctagagcattatctctttacggggaacagtcccaagacccag
gacgaactcttcctgttgctggactcccaaggcaccttccacacaaaggggtactatgca
gctttggaggccaagaaggagaggatgagcaaacacgcccagacctttggggccaagcag
cccacgcatcaggggggcccagcacaggaccgaggtgtgtacctgtccctcctggcttcc
ctccgccgccgtgcacagctgcccgtggtggtgttcaccttttcccggggccgctgtgat
gagcaggctgcgggcctcacctcccttgacctcaccacaaattcagagaagagcgagatt
cacctcttcctgcagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtcagagctcctgcaccgaggcctgggtgtgcaccacagcggcatccta
cccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcctgttt
gccactgagacctttgccatgggggtaaatatgccggcccgaacagtggtgtttgattcc
atgcgcaagcacgacggctccaccttccgggacctgctccctggggagtatgtgcagatg
gcaggtagggcaggccggaggggcctggaccccacaggcaccgttatcctgctctgcaag
ggccgagtgcccgagatggtggacctgcaccgaatgctgacgggtaagccatcacagctg
cagtcgcagttccgcctcacatacaccatgatcctcaacctgctgcgggtggacgccctc
cgggtggaagacatgatgaagaggagcttctcggagtttccgtcccgcaaggacagcaag
gcccatgaacaggctctagctgaactaaccaagaagctggaggccttagaggaacctgac
ctgaccggccaactggtcgacctttccgagtattacatctggggagaggaattgacagag
attcggagcctgatccagcgacgtgtcatagagtctgtgaatgggctgaaatctctctca
tccggaagggtggtggttgtgaagaatcaggatcatcacaatgcactgggtgtgatcctg
caggtctcctcaaactctactggcagatcattcacaaccctggtcttgtgtgataagccc
ctgtctgaggacccacaggacagggggtcggcctccccaggcgtgccctacccagatgac
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacactgtggccaagctt
cagcccagagatgtggctgccatcaccaccaaagtgctccgggtgaacggagagaagatc
ttggaggacttcagcaagaggcagcaactgaaatttaagcaggatcctcctgttgctgcc
gtgactactgctgtccaggaactgctgcgcctgtctcaggcctacccagcaggaccccct
accctcgaccctgtcaacgacttgcagcttaaggatatgtcagtggttgagggtggactc
cgtgccaggaagctcgaggagctgatccgggaagctcagtgtgtgcacagcccccgtttc
cctgcccagtacctgaagcttcgggagcgaatgcaggtacaaaaggagatggagcggctg
cgcttcctactgtcagatcagtcgctgctactgctccccgagtaccaccagcgagtacag
gtgctccaaaccctgggttatgtagacgaggcaggcacggtgaagctggcggggcgggtg
gcttgtgccatgagcagccacgagctgctcctcactgagctcatgtttgacaatgctctg
agtgccctgcggccagaggagattgcagccctgctctctggcctggtctgccagagccct
ggggacactggggaacagctcccaagtaccctcaaacagggagtggaacgtgtccgggcc
gtggccaagcggattggtgaggttcaggcggcctgtggcctgaaccagacagtggaggaa
tttgtaggggagctgaattttgggcttgttggagttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcggggacccctgagggcctggtggtccgctgcatc
cagcgcctcgccgagatgtgtcggtcgttgcggggggcggcccgtctggtaggcgagcct
gtgttaggtgccaagatggagacggcagccaccctgctacggagggacatcgtcttcgca
gccagcctctatactcagtga
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