Phyllostomus discolor (pale spear-nosed bat): 114497361
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Entry
114497361 CDS
T07739
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114497361 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdic03019
]
114497361 (MTREX)
03041 Spliceosome [BR:
pdic03041
]
114497361 (MTREX)
03009 Ribosome biogenesis [BR:
pdic03009
]
114497361 (MTREX)
03016 Transfer RNA biogenesis [BR:
pdic03016
]
114497361 (MTREX)
Enzymes [BR:
pdic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114497361 (MTREX)
Messenger RNA biogenesis [BR:
pdic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114497361 (MTREX)
Spliceosome [BR:
pdic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114497361 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
114497361 (MTREX)
Ribosome biogenesis [BR:
pdic03009
]
Eukaryotic type
Pre-60S particles
Helicases
114497361 (MTREX)
Transfer RNA biogenesis [BR:
pdic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114497361 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
114497361
NCBI-ProteinID:
XP_028368878
UniProt:
A0A6J2LSK9
LinkDB
All DBs
Position
3:complement(1285412..1319513)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDPAAAPGARKDKDKGKWKGPPGPAERAGKRPDGHLQPEPTHVGKT
KRDADFESPDEPVFGKKPRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFSTAMQVLRDAGDLAKGDQK
GRRGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGVGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKSSEEQYSRIVIPNEESVVVYYKIRQQLARLGQEIEAYTHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPGSGELDPLYVVEVLLRCSRESLENSATEAAKPAKPDE
RGEMQVVPVLVHLLSAISSVRLYIPRDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHSDPSLETVYTLCERKAQIALDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQAAALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctgttcagcgtgttcgaggacgaccccgccgctgcg
ccgggagccaggaaggacaaggacaaggggaaatggaaggggcccccggggcccgcggag
agggccgggaagcgtcccgatggccacctgcagcccgagcctacccacgtcgggaaaacc
aagagggacgcggatttcgagagcccggacgagcccgtcttcgggaagaagcccagggtg
gaggagtctgtaaccgaggacctgagcctggcagacctgatgcccagagtgaaagtgcag
tcggtggaaaccgttgaaggctgtacccacgaggtggctcttcctgcagacgaagactat
ttaccgcttaaacctcgagttggaaaagctgcaaaggaatacccgttcattcttgacgct
tttcaaagggaagccattcagtgtgtcgacaacaaccagtctgtcctagtgtctgcccac
acgtcggcggggaaaaccgtgtgtgccgagtacgccattgccctggccctgcgggagaaa
cagcgggtgatcttcaccagccccatcaaggcgctgagcaaccagaagtaccgcgagatg
tacgaggagttccaggacgtgggcctgatgacgggggacgtcaccatcaaccccacggcg
tcctgtctcgtcatgaccacggagatcctgaggagcatgctgtacagaggctctgaggtc
atgcgggaagtcgcctgggtcatattcgatgagatccactacatgagagactcagagcgt
ggcgtggtgtgggaggagaccatcatcctgctccccgacaacgtgcactacgtcttcctc
tcggccaccatccccaacgcccggcagtttgctgagtggatctgccacctacacaagcag
ccctgccacgtgatctacacggactaccggcccacgcccctgcagcactacatcttcccg
gctggcggggacggcctgcacctggtggtcgacgagaacggcgacttccgggaggacaac
ttcagcacggccatgcaggtgctccgcgacgcgggggacctggccaagggcgaccagaag
ggccggcgcggagggacgaaaggaccatcaaacgtgttcaagattgtgaagatgatcatg
gagaggaacttccagcccgtgatcatcttcagcttcagcaagaaagactgcgaggcctac
gcactccagatgaccaaactggacttcaacacagacgaggagaagaagatggtggaggag
gtgttcagcaacgccatcgactgcctgtcggatgaggacaagaagctcccccaggtggag
cacgtgctgcccctgctgaagcgcggcgtcggcatccaccacggcggcctgcttccgatc
ctgaaggagaccatcgagatcctgttttccgaagggctgataaaggccctgttcgcgacg
gagactttcgcgatgggaatcaacatgccagccagaacagtgttatttacaaatgcccgg
aaattcgacgggaaagacttccgatggatctcctccggggagtacatccagatgtccggc
cgcgcgggccggcggggcatggacgacaggggcatcgtgatcctcatggtggacgagaag
atgagcccgaccgtggggaagcagctgctcaagggctcagcggaccctctgaacagtgcc
ttccacctgacctacaacatggtcctgaacttgctgcgcgtggaggagatcaaccccgag
tacatgctggagaagtccttctaccagttccagcactaccgcgccatccccggcgtggtg
gagaaggtgaagagctcggaggagcagtacagccggatagtgatccccaacgaggagagc
gtggtcgtgtactacaagatcaggcagcagctggcccggctgggccaggagatcgaggcc
tacacccacaagcccaagtactgcctgcccttcctgcagcccggccgcctggtgaaggtg
aagaacgaaggagatgattttggctggggagtggtggtgaatttctccaagaagtcaaac
gtgaagcccggttccggggagctggaccccctgtacgtggtggaggtgcttctgcgttgc
agccgggagagcctggagaactcggcgaccgaggcggccaagccggccaagcccgacgag
cgcggggagatgcaggtggttccggtgctggtgcatctcctgtccgccatcagcagcgtg
cggctctacatcccccgggacctgcggccgctggacaacaggcagagcgtgctcaagtcg
atccaggaggtgcagaagcggttccccgacggcgtcccgctgctggaccccatcgacgac
atgggcatccaggaccagggcctgaagaaggtcatccagaaggtggaggccttcgagcac
cggatgtactcgcacccgctgcacagcgaccccagcctggagaccgtgtacacgctctgc
gagcggaaagcgcagatcgcgctggacatcaagtcggcgaagcgggagctcaagaaggcc
aggacggtcctgcagatggacgagctcaagtgccgcaagcgcgtgctgcggcggctgggg
ttcgccacgtcgtccgacgtcatcgagatgaaggggcgcgtggcctgcgagatcagcagc
gccgacgagctgctgctgaccgagatgatgttcaacggcctcttcaacgacctgtcggcc
gagcaggccgcggccctgctgagctgcttcgtgttccaggagaactcgagcgagatgccc
aagttaacggagcagctggccggccccctccgccagatgcaggagtgtgcgaagcgcatc
gccaaagtctcggcagaggccaagttggagatcgacgaggagacctacctgagctccttc
aagcctcacctgatggacgtggtgcacacctgggccaccggggcgaccttcgcccacatc
tgcaagatgaccgacgtcttcgaaggcagcatcatccgctgcatgcggcgcctggaggag
ctgctgcggcagatgtgccaggcggccaaagccatcgggaacacggagctggagaacaag
ttcgcggaaggaatcaccaagatcaagagggacatcgtgttcgccgccagcctctacctg
tag
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