Phyllostomus discolor (pale spear-nosed bat): 114502327
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Entry
114502327 CDS
T07739
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114502327 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdic03041
]
114502327 (DDX42)
Enzymes [BR:
pdic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114502327 (DDX42)
Spliceosome [BR:
pdic03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114502327 (DDX42)
Complex B
114502327 (DDX42)
Complex C
U2 SnRNP specific factors
114502327 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
114502327
NCBI-ProteinID:
XP_028374959
UniProt:
A0A6J2M6K4
LinkDB
All DBs
Position
8:complement(90005244..90035870)
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AA seq
935 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFRSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGLNSSDSPAASATKGIPGFGNTGNLSSAPVTY
PTAGAQGVNNTASGSNSREGIGGSNGKRERYTENRGGNRHSHGESGSGKHGDSPHHGDGG
RYGDGYRYPESSSRHADSHRHGENKHGGGGSRHGESRGASDGRNGENRKEGCNRESKVDP
KVDSKTDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcacgaagagggggtttggctttggaggttttgcc
attagtgctggaaagaaggaggaacccaaactcccacaacagtcccacagtgcctttggg
gcaaccagttcttcttctggatttggaaagtctgctccaccacagctcccttctttctac
aaaattggatctaaacgagccaattttgatgaagaaaatgcatattttgaagatgaggaa
gaagactcgagcaacgttgatttaccttatattcctgctgaaaactcgcctactcgccag
cagttccgttccaagcctgcagattccgacagtgatgacgatcccttggaggcgttcatg
gctgaagtagaagatcaggcagctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaacccaactgctggtgtggttcaagaggaagaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcatcgatcctctt
cctcccattgatcattcagagattgactatccgccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcaccccacagcagctgatagatctccggcataagctcaat
cttcgggtctctggtgccgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgaatacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggaagagacatgattggtattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgctgattcatataatggaccagaaggaa
ctggaaccaggtgatggaccaattgcagtgattgtgtgtcccactagggagctttgccag
cagatccatgcggaatgtaagcggtttgggaaagcatataatctccgatcagtggccgtg
tacggtggagggagcatgtgggagcaagccaaggcccttcaggaaggggcagagatcgtt
gtgtgtaccccaggccgactgattgatcatgtaaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gtgcgatccatagccagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgagtggtg
cagggagacatcggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcctagtaaatggaactggcttacccggcgtttggtggagtttacttcttcggggagt
gtcctcctgtttgttactaaaaaagccaatgctgaggagctagccaataaccttaaacag
gagggtcataatcttgggctgcttcatggggacatggaccagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatccccatcctggtggccacagatgttgcagctcgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccatactcacaggattggccgcacgggacgagcgggtgagaagggtgtggcctatacc
ttgttgacccccaaggacagcaattttgctggtgaccttgtccggaatttggaaggagcc
aatcaacacgtttccaaggaactcctagatctggccatgcagaatgcctggtttcgaaaa
tcccgattcaaaggagggaaaggcaagaagctgaatattggtggaggaggcctgggctac
agggagcggcctggcctgggctcagaaaacacggatcgagggaacaacaacaatgtaatg
agcaactatgaggcctacaagccctccacgggagccatgggagatcggctgacggcaatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggctggaagttctgctgctggggcaagtggatggacaagtgcagggagcttgaattct
gttccaactaattcagcccagcagggccttaacagttctgacagccccgctgccagtgcc
accaagggcatcccaggctttggcaatactgggaacctcagcagtgccccggtgacgtac
cccactgccggagcccagggagtcaacaacacagcttcagggagtaacagccgagaaggg
attgggggtagcaatgggaaaagagagagatatactgagaaccggggtggcaaccgtcat
agccatggagagagtggcagtggcaagcatggcgatagcccacatcatggagatggtggt
cgatacggagatggataccgctatccagaaagcagtagccggcatgccgatagccatcgt
catggggagaacaagcatggaggaggtggaagccgacatggggagagtcgaggtgcaagt
gatggccggaatggtgaaaacaggaaagaaggttgtaaccgtgaaagcaaggtggacccc
aaggtggacagcaagacggacaagatggacagcaagacagataagacagctgatggtttt
gctgtccctgagccacccaagcgcaagaaaagcagatgggacagttag
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