Phyllostomus discolor (pale spear-nosed bat): 114510996
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Entry
114510996 CDS
T07739
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03030
DNA replication
pdic03410
Base excision repair
pdic03420
Nucleotide excision repair
pdic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114510996 (LIG1)
03410 Base excision repair
114510996 (LIG1)
03420 Nucleotide excision repair
114510996 (LIG1)
03430 Mismatch repair
114510996 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdic03032
]
114510996 (LIG1)
03400 DNA repair and recombination proteins [BR:
pdic03400
]
114510996 (LIG1)
Enzymes [BR:
pdic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114510996 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
114510996 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114510996 (LIG1)
DNA replication proteins [BR:
pdic03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114510996 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114510996 (LIG1)
DNA repair and recombination proteins [BR:
pdic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114510996 (LIG1)
NER (nucleotide excision repair)
Other NER factors
114510996 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
114510996 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
114510996
NCBI-ProteinID:
XP_035868376
UniProt:
A0A7E6CNB9
LinkDB
All DBs
Position
12:complement(19676338..19706732)
Genome browser
AA seq
911 aa
AA seq
DB search
MQRSIMSFFQPKKEGKAKKPEEASDSIRETEPPPKVALKERNRVVPESESPVKRPGRRAA
QVLCSDGEEEDEAITPPKGQKPAPDSPPASPPSPVMVPESSPSLSGTSPVRISPSGIPKR
RTARKQLSKRTIQDVLDEHNRDKDRETKRKREEEEAETPTESLPEPEGAKEKEADEGGPL
QTPSEPQDTCNAETPPRRAAQSLRPGKRTGRSLPPRAPKTLSSFFTPRKPAVKKEVKEAG
PGTPRKEEPKGPLDPGSYNPAKNSYHPVHDACWKQGQKVPYLAVARTFEKIEEVSARLRM
VETLSTCFALWWPCHLPDLLPILYLSLNCLGPPQQGLELGVGDGVLLKAVARPQGRQLES
VRAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFARFRDIARLTGSASTAKKIEIIK
GLFVACRHSEARFIARALSGQLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKA
AEARKSWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPT
RGVSEVLKRFEEAAFTCEYKYDGQRAQIHFLEGGEVKIFSRNQEDNTGKYPDIISRIPKI
KLPSVTSFILDSEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGE
SLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAEFLEQSVKDSCEGLMVKTLD
VHATYEIAKRSHNWLKLKKDYLNNVGDTLDLVVIGAYLGRGKRAGRYGGFLLACYDEESE
GLHAICKLGTGFSDEELEEHHRSFQALVLPTPRSYVRADGAVAPDHWLEPRIVWEVKCAD
LSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPETATTGAQVACLYRKQSQIQNQQG
GDADSDQEDFY
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaacccaagaaagagggcaaagcaaagaagcca
gaggaggcgtccgacagcatcagagagacagagccccctccaaaggtggcgctgaaggag
cggaacagagtggtgccagagagcgagtcccctgtgaagaggccggggaggagggcggcc
caggttctgtgcagcgacggtgaggaggaggacgaagccatcacaccccccaaaggccag
aagcctgccccagactccccaccagcttccccacccagtccggtcatggttcccgagagc
agcccttccctgtccggcacgtctccggtgcgcatctccccgtcgggcatcccgaagcgt
cgcacagctcggaagcagctttctaaacggacgattcaggatgtcctagacgagcacaac
agggacaaggaccgagagaccaagaggaagagggaggaagaagaggcagagaccccaaca
gaaagcctcccagagccagaaggggccaaggagaaggaagcagatgaaggggggccgctg
cagacgccctctgagccccaggacacctgcaacgcagagaccccgccaagaagagcagct
cagagcctgaggcccgggaagaggaccgggcgaagccttccgcccagagctcccaagacg
ctcagcagcttcttcaccccccggaagccagcagtcaagaaggaagtgaaggaagcgggg
cctggcaccccaagaaaggaggagcccaagggcccgctggacccaggcagctacaaccct
gccaagaacagctaccaccctgtgcacgacgcctgttggaagcagggccagaaggtccct
tatctggctgtggcccggacattcgagaagatcgaggaggtttctgctcggctccggatg
gtggagaccctgagcacttgcttcgctctgtggtggccctgtcacctaccagacctcctc
cccatcctatacctcagtctcaactgcctcgggccaccccagcagggcctggagcttggc
gttggggatggtgtccttctcaaggcggtggccaggccacagggtcggcagctcgagtct
gtccgggctgaggcggccgagaagggtgatgtggggctggtggccgagaacagccgcagc
acccagaggctcatgctgcccccgcctgccctcaccgccgccggggtcttcgccaggttc
cgagacatcgcccggctcactggcagtgcttccacagccaagaagatagagatcatcaaa
ggcctcttcgtggcctgccgccactcagaagcccggttcatcgccagagccctgagcgga
cagctgcgcctcgggctggcagagcagtcggtgctggccgcccttgcccaggccgtgagc
ctcacgcccccaggccaagaattccccccggccgtggtggatgccgggaagggcaaggca
gcagaggccagaaagtcatggctggaggagcagggcatgatcctgaagcagacgttctgt
gaggtgcccgacctggatcgcatcgtcccggtgctgctggagcacggcctggagcggctg
ccggagcactgccggctgagtccaggggtccccctgaaaccgatgttggcccaccccacc
cggggtgtcagcgaggtcctaaaacgctttgaggaggctgccttcacctgcgagtacaaa
tacgatgggcagagggcacagatccatttcctggagggcggggaggtaaagatcttcagc
aggaaccaggaagacaacacgggaaagtaccccgacatcatcagccgcatccctaagata
aaactcccgtcagtcacatctttcattctggactcggaagcagtggcttgggaccgggaa
aagaaacagatccagccattccaagtgctcaccacccgaaaacgcaaggaggtggacgcg
gcggagatccaggtgcaggtgtgtctgtatgccttcgatctcatctacctcaacggagag
tccctggtacgcgagcccctctcccgacgccggcagctgctccgggagaacttcgtggag
acagagggcgaattcgtcttcgccacctccctggacaccaaggacatggaccagatcgcc
gagttcttggagcagtcagtgaaagattcctgcgaggggctgatggtgaagaccctggat
gtccacgccacctacgagatcgccaagaggtcacacaactggctcaagctgaagaaggac
tacctgaacaatgtgggcgacaccctggatcttgtggtgattggtgcctacctgggccgg
gggaagcgggccggccgctacgggggcttcctgctggcctgctacgacgaggagagtgag
gggctgcatgccatatgcaagctcggcactggcttcagcgacgaggagctggaggagcac
caccggagcttccaggccctggtgctgcccaccccgcgctcctacgtccgcgcagacggc
gctgtggcccccgaccactggctggagccccgcatcgtgtgggaggtcaagtgcgccgac
ctctccctctccccgatctaccctgcggcccgggggctggtggacagtgagaagggcatc
tcccttcgcttccctcggtttatccgagtccgtgaagataagaagccagagacggccacc
accggtgcccaggtggcctgtctgtacaggaagcagagtcagatccagaaccagcagggc
ggggacgcagactccgaccaggaggacttctactag
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