Paracoccus sediminicola: PAF18_00420
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Entry
PAF18_00420 CDS
T09284
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim00521
Streptomycin biosynthesis
pdim00523
Polyketide sugar unit biosynthesis
pdim00525
Acarbose and validamycin biosynthesis
pdim00541
Biosynthesis of various nucleotide sugars
pdim01100
Metabolic pathways
pdim01110
Biosynthesis of secondary metabolites
pdim01250
Biosynthesis of nucleotide sugars
Module
pdim_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PAF18_00420 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PAF18_00420 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
PAF18_00420 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PAF18_00420 (rfbB)
00525 Acarbose and validamycin biosynthesis
PAF18_00420 (rfbB)
Enzymes [BR:
pdim01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PAF18_00420 (rfbB)
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Ortholog
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
adh_short
NmrA
NAD_binding_10
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
WBU56946
LinkDB
All DBs
Position
complement(87265..88302)
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AA seq
345 aa
AA seq
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MKILVTGGAGFIGSAVIRQAIRDGHQVVNLDALTYAANLRNVDSVAGAPGYAFEHADIRD
RAALDRILAAHRPDAVMHLAAESHVDRSIDGPGAFIDTNVTGSYHLLEAARAYWVAAGRP
AQFRFHHVSTDEVFGSLGPEGRFTEDSPYDPRSPYSASKAASDHLVRAWHETYGLPVLLS
NCSNNYGPFHFPEKLVPVVILKALEGAPIPVYGDGGNIRDWLFVEDHADALLTVLTRGEV
GRSYHIGGESEARNIDLVRMICAHMDERRPDHAPHENLITFVPDRPGHDRRYAIDPSRIR
DELGWRPSVSLEEGLRRTVDWYLEHGDWWRPLLTRDGVGMRLGTG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctcgtcaccggcggggcggggttcatcggctcggccgtgatccggcaggcg
atccgggacgggcatcaggtcgtcaatctcgacgcgctgacctatgccgcaaatcttcgc
aatgtcgacagcgtcgccggggcgccgggctatgccttcgaacatgccgatatccgggac
cgcgccgcgcttgatcgtatacttgccgcgcatcgacccgacgcggtgatgcatcttgcc
gccgaaagccatgtcgaccgctcgatcgacgggccgggtgccttcatcgacaccaatgtg
accggcagctatcatcttctcgaagctgcccgcgcctattgggttgcggcgggccgaccc
gcgcagttccggtttcatcatgtatcgaccgacgaggtcttcggctcgctcgggccagag
gggcggttcaccgaggacagcccctatgacccgcgcagcccctattcggccagcaaggcg
gcgagcgatcatctcgtccgagcctggcacgaaacctatgggctgccggtcctgctcagc
aattgctcgaataattacgggccgttccacttccccgaaaagctggtgccggtggtgatc
ctcaaggcactcgagggggcgccgatcccggtctatggcgatggcgggaatatccgcgac
tggctgttcgtcgaggaccacgccgatgcgctgctgacagtgctgacccgaggcgaagtc
gggcgcagctatcatatcggcggcgagagcgaggcccgcaatatcgacctcgtccgtatg
atctgcgctcatatggacgaacggcgcccggatcatgcgccccatgagaatctcatcacc
ttcgtgcccgaccgccccggccatgaccgccgctatgccatcgacccgagccgcattcgc
gacgagctcggctggcgcccgtcggtctcgctcgaagaagggctgcgacgcaccgtggac
tggtatctggaacatggcgactggtggcgcccgcttctcactcgcgacggggtcggcatg
cggctggggaccgggtga
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