Paracoccus sediminicola: PAF18_02195
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Entry
PAF18_02195 CDS
T09284
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03030
DNA replication
pdim03430
Mismatch repair
pdim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAF18_02195 (dnaE)
03430 Mismatch repair
PAF18_02195 (dnaE)
03440 Homologous recombination
PAF18_02195 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdim03032
]
PAF18_02195 (dnaE)
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_02195 (dnaE)
Enzymes [BR:
pdim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PAF18_02195 (dnaE)
DNA replication proteins [BR:
pdim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PAF18_02195 (dnaE)
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PAF18_02195 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WBU57280
LinkDB
All DBs
Position
444123..447587
Genome browser
AA seq
1154 aa
AA seq
DB search
MVENLPRFIHLRTHSEHSLLEGAVPVKKLIALAEKAGMPAVALTDTNAMFAGLEFSVKAM
EQGIQPIIGCQWTMRIGEHYGAVVALAQNRQGWLNLMTLSSAMYLRKGPDPWHITEEDLT
AHAEGLILLTGGAEGAVGKLIQSGDAAGAEGLMRRLKDAFGDRIYVELTRHKDDSGRLMA
AETATEDSFVKLAYMLEIPLVATNDVYFPKPDMYEAHDALICISERAYVDQSQPRRRLTP
NHDFKSAEEMALLFADLPEAIENTVEIARRCAFAVSRHAPILPRFADDEVEELRRQAKKG
LEERLQLIPHAVSVEKYHERLDFELGIIEQMGFPGYFLIVADFIKWAKDHDIPVGPGRGS
GAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGH
EKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSKMIPVEGVKPVSVTKAITDEPRLR
EARDSEEVVARLLDYAEKVEGLYRNASTHAAGVVIGDRPLDQLVPLYRDPGSDMPATQFN
MKWVEQAGLVKFDFLGLKTLTVIQNAVDLINGGGRPLHVAADGRKLYDPPEGAENQINAI
PLDDKPSYDLFASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENIPTY
CEVKNGQRELQSIHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKI
AEEMAKERPKFIKGSVENGVDEKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKA
NHPVEFMAGVMNCDIHLTEKLSVYKRELDRMGIEVVPPCVNRSGATFTVKEGRIHYALGA
LKGVGVEAMRAIETTRGETPFADMVDFARRVDLRRIGKRALEMMARAGAFDTLDDNRARM
MASLDGLVAFSGASHDQAASSQSSLFGGGEDLPPPRPVLAQVWLPSERLGQEHQAIGFYL
SGHPIDDYLPALRRIEVSTLAEIRAAAASGPLVTYIAGTVSSRQEKKSAKGNRFAFIGAS
DPTGLYEAVVFSDVLEACHAHLEPGKNVVMQVQVEPQGEEVKMLARSVVPLEEAIANVGP
AELVIEVANDCDFKGLQGVLDNLDGERGRRGKLILRVHEGDEEYDIQLSDRAPVSPAARQ
HLRVVPGVLEVIEQ
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaaatctgccccgattcatccatctccgcacccattccgaacattcgctgctg
gaaggcgcggtgccggtcaagaagctgatcgccctcgccgaaaaagccggcatgccggcg
gtggcgctgaccgacacgaatgccatgttcgccgggctggaattcagcgtgaaggcgatg
gagcagggcatccagccgatcatcggctgtcagtggacgatgcggatcggcgagcattac
ggtgcggtggtggctctggcgcagaaccggcagggctggctgaatctgatgacgctgtct
tcggcgatgtatctgcgaaaggggccggacccgtggcacatcaccgaagaggatctgacg
gcgcatgcggaagggctgatcctgctgaccggtggggcagagggcgccgtgggcaagctg
atccagtcgggcgacgccgccggggccgaagggctgatgcgccgtctcaaggatgcgttc
ggcgaccggatttatgtcgagctaacgcgccacaaggacgactccggccggctgatggct
gccgagaccgcgaccgaggacagcttcgtcaaactcgcctatatgctggagattcctctg
gttgcgacgaatgacgtctatttcccgaaacccgatatgtatgaggcgcatgacgcgctg
atctgcatctcagaacgtgcctatgtcgaccagtcccagccgcgccgccgccttacgcca
aatcatgatttcaagagcgccgaggaaatggcgctgctgttcgccgatctgcccgaggcg
atcgagaataccgtcgagatcgcccggcgttgtgcatttgcggtcagccgccacgcaccg
atcctgccacgtttcgccgatgacgaggtcgaagagctgcgccgtcaggcaaagaaaggg
ctggaggagcggctgcagctcatcccccatgcggtcagcgtcgagaaatatcacgagcgg
ctcgacttcgaactgggcatcatcgagcagatgggctttccgggctatttcctgattgtc
gccgacttcatcaaatgggccaaggatcacgatattccggtcggaccgggccggggctcc
ggtgcggggtcgctggtggcctatgcgctgaccatcaccgatctggacccgctgcgctat
tcgcttctcttcgaacgcttcctgaacccggaacgggtctcgatgcccgatttcgacatc
gatttctgcatggatcggcgggaagaggtgatccgctatgtgcaggaaaaatacggccac
gagaaggtcggtcagatcatcaccttcggcgcgcttctgtccaaggccgccgtgcgcgat
gtcggccgtgtgctgcaactgccattcggtcaggtggacaggctgtcgaagatgatcccg
gtcgagggcgtgaagccggtttctgtcaccaaggccatcaccgacgagccgcgcctgcgc
gaagcccgcgacagcgaggaggtcgtggcccgccttctggactatgccgagaaggtcgag
ggtctgtatcgcaacgcctcgacccatgcggcgggcgtcgtgatcggcgacaggccgctg
gatcagctggtgccgctttatcgcgatccgggttcggacatgcctgcgacgcagttcaac
atgaaatgggtcgaacaggccgggctggtgaagttcgactttctgggcctgaaaaccctg
accgtcattcagaacgcggttgacctcatcaatggcggcgggcggcccctgcatgtcgcc
gcagacggtcgtaagctatacgacccgccggaaggcgcggaaaaccagatcaacgcgatc
ccgctggacgacaaacccagctatgatctgttcgcatccgcccgcaccgtggccgtgttc
caggttgaaagctcgggcatgatggatgcgctgcggcgcatgaaaccgacctgtatcgag
gatatcgtggcgctggtggcgctgtatcgtcccggcccgatggagaatatcccgacctat
tgcgaggtgaagaacggccagcgtgagctgcaatccatccacccgctgatcgaccacatc
cttgaagagacgcagggcatcatcgtctatcaggaacaggtgatgcagatcgcgcaggtc
atggccggctattcgcttggcggagccgacctgctgcgtcgcgccatggggaagaagatc
gccgaggaaatggccaaggagcgcccgaaattcatcaaaggcagcgtcgaaaacggcgtc
gacgagaagaaggccggcgaagtctttgaccttctggaaaaattcgcaaattacggcttc
aacaaatcacacgccgcagcttatgccgtggtcagctatcagaccgcctggctgaaggcg
aaccaccctgtcgagttcatggccggggtgatgaattgcgacatccatctcacggaaaag
ctgagcgtctacaagcgagagctcgaccggatggggatcgaggtggtgccgccttgcgtg
aaccggtccggcgcgaccttcaccgtcaaagagggccgtatccactatgcgctcggcgcg
ctgaagggcgtcggcgtcgaggcgatgcgggccatcgagaccacgcgcggcgagacaccc
ttcgccgatatggtcgatttcgcccgccgcgtcgatctgcgccgcatcggcaagcgcgct
cttgagatgatggcgcgggccggggctttcgacacgctcgacgacaaccgcgcccggatg
atggccagtctcgacgggctggtggcgttctcgggcgccagccacgatcaggccgcctcc
agccagtcctcgctgttcggcgggggcgaggatctgccgcctccgcgtccggtgctggcg
caggtctggcttccttccgagaggctggggcaggaacatcaggccatcggcttctacctg
tcgggccacccgatcgacgattacctgcctgcactgcgccggatcgaggtgtccacattg
gccgaaatccgcgccgcggccgcatccggcccgctggtcacctatatcgccggaaccgtg
tcctcgcggcaggaaaagaagtcggccaagggaaaccgtttcgccttcatcggcgcctcg
gacccgacgggtctttatgaggcggtggtgttctcggacgtcctcgaagcctgccacgcg
catctcgaacccggcaagaacgtggtcatgcaggtgcaggtcgagccgcagggcgaagag
gtcaagatgctcgcgcgttcggtcgtgccgctggaagaggcgattgccaatgtcggtccc
gccgagctggttatcgaggttgcgaatgattgtgacttcaagggactacagggcgttctt
gacaatctcgacggcgagcgggggcgtcgcggcaagctgatcctgcgcgtgcatgaaggc
gatgaggaatacgacatccagctgtcggaccgcgcgccggtcagccccgcggcgcgccag
catctgcgcgtcgtgccgggcgtgctggaggtcatcgaacaatag
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