Paracoccus sediminicola: PAF18_03195
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Entry
PAF18_03195 CDS
T09284
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PAF18_03195 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_03195 (xth)
Enzymes [BR:
pdim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PAF18_03195 (xth)
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PAF18_03195 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
WBU57464
LinkDB
All DBs
Position
644902..645687
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AA seq
261 aa
AA seq
DB search
MKIASFNINGIKARIAALSDWLAAAAPDLAVLQEIKSVDENFPAAHFEDMGYNVATHGQK
GFNGVAILSKLPLEDVTRGLPGDDADEQARYIEATVVGDRAVRVAGLYLPNGNPAPGPKY
DYKLDWMERLRLRAAELLATEMPVVMLGDFNIIPQPRDAAEPGEWVRDALFLPESRAAFR
RIAAQGWTDALRDADPYGHRGPFTFWDFQGGAWRRDNGIRIDHLMLSPQAADIVNSSGVD
REVRAGEKPSDHVPVWVDLAA
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgccagtttcaacatcaacggcatcaaggcgcgcatcgccgcgctgagcgat
tggctggcggcggccgcgccggatctggccgtgttgcaggaaatcaagtcggtggacgag
aatttccctgccgcgcatttcgaggatatgggctataacgtcgcgacacatgggcagaaa
ggcttcaatggcgtggcgatcctgtcgaagctgccgctggaagatgtgacgcgcggcttg
cccggggacgatgccgacgaacaggcccgctatatcgaggcgacggtggtcggtgatcgc
gcggtgcgggtggcggggctgtacctgcccaatggcaacccggcgccggggccgaaatac
gactataagctcgactggatggaacggttgcggttgcgcgctgccgagttgctggccacc
gaaatgccggtggtgatgctgggcgatttcaatatcattccgcaaccccgcgatgctgcc
gagccgggtgagtgggtcagggacgcgctgttcctgcccgaaagccgcgccgcgtttcgc
cgcattgcagcgcagggctggaccgatgcgctgcgcgatgccgatccttacggccatcgc
ggtcccttcaccttctgggattttcagggcggcgcgtggcggcgcgataacgggattcgt
atcgaccatctgatgttgtctccgcaagcggctgatatcgtgaattcatctggcgtggat
cgagaggttcgcgcaggcgaaaagccatcggatcacgtgccggtctgggtcgatcttgca
gcctga
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