Paracoccus sediminicola: PAF18_03395
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Entry
PAF18_03395 CDS
T09284
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pdim
Paracoccus sediminicola
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdim03016
]
PAF18_03395 (rnd)
Enzymes [BR:
pdim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PAF18_03395 (rnd)
Transfer RNA biogenesis [BR:
pdim03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PAF18_03395 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WBU57499
LinkDB
All DBs
Position
693404..694582
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AA seq
392 aa
AA seq
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MTEFTTLTTTEALAQFCEQAKTQPYVTIDTEFLRERTFYSRLCLIQMALPPASDGKSADG
PAVLVDPLSYGLSLAPLYDLFRHEATVKVFHAARQDLEIFFHDAGIFPTPLFDTQVAAMV
CGFGEQVGYETLVRKIAKDNLDKSSRFTDWSQRPLSKAQQSYAIADVTHLRAIYESLKSQ
IEKSGRESWVAEEVAVLVDPETYITRPEDAWKRVRTRSNSPRFMAIIRKLAEFREEYAQS
RNVPRSRVFKDDALVELASTKPKTEAELGKSRLLLREGRKPEIAQGILAAVKAGLEDPDP
PRVPKEQPGPPGNGALGELLRVLLKAKAEAARVAPKLIATTSDLDAIAQGARDVPALQGW
RAEVFGRDALRLAEGQIALSAAGGAVQVVELP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatttacaactctcaccacgaccgaggcgctcgcccagttctgcgagcaggca
aagacccagccctatgtcaccatcgacaccgagtttctccgcgaacggaccttctattcc
cggctctgcctgatccagatggcgctgccgccggcctctgacggcaaatccgcggacggc
ccggccgttctggtcgatccgctgtcctacggcctctcgctggcgccgctctatgatctg
ttccgccacgaggcgacggtaaaggtattccacgccgcgcggcaggatctggagatcttc
tttcacgatgccgggatcttcccgaccccgcttttcgacacccaggtcgcagcaatggtc
tgcggcttcggcgagcaggtcggctacgagacgctggtgcgcaagatcgccaaggataat
ctggacaaatcctcgcgcttcaccgactggtcgcaacgccctctttcgaaggcgcagcag
agctatgccatcgccgatgtcacgcatcttcgcgccatctatgaatcgctgaagtcgcag
atcgagaaatccggacgggaaagctgggtcgcggaagaggtcgcggtgctggtcgatccc
gaaacctatatcacccggcccgaggacgcctggaagcgggtgcgcacgcgttcgaactct
ccgcgcttcatggccattatccgcaagctggccgagttccgcgaggaatatgcgcaaagc
cgcaacgtgccgcgctcgcgggtgttcaaggatgatgctctggtcgagctggcctcgacc
aaacccaagaccgaagccgagctgggcaagtcccggctgctgctgcgcgaggggcgcaag
cccgagattgcgcagggaatcctggccgcggtgaaggccgggctggaagatccggacccg
ccccgcgtgcccaaggaacagcccggcccgcccggcaatggcgcgctgggagagcttttg
cgcgtgctgctgaaggccaaggccgaagccgcgcgcgtggcgccgaagctgatcgcgacc
acgtccgacctcgatgcgattgcacagggcgcgcgcgacgtcccggcgcttcagggctgg
cgggccgaggtgttcggccgcgatgcgctgcggctggccgaggggcagatcgcgctttcc
gcggcgggcggcgcggtgcaggtggtcgagctgccgtga
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