Paracoccus sediminicola: PAF18_04945
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Entry
PAF18_04945 CDS
T09284
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pdim
Paracoccus sediminicola
Pathway
pdim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PAF18_04945 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdim03021
]
PAF18_04945 (rpoD)
Transcription machinery [BR:
pdim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PAF18_04945 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
PASTA
Motif
Other DBs
NCBI-ProteinID:
WBU57782
LinkDB
All DBs
Position
992440..994425
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AA seq
661 aa
AA seq
DB search
MAAKDEDSSRDESQENAHSLDISQTAVKKMIAEAKERGYITYDQLNNVLPPDQVSSDQIE
DVMSMLSEMGIQVVENEEEGEDGDSGGEVVTTSNSREVAVATTETEKLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITMWRQELLDEDILLRDVID
LETTFGQSMEDGDEEELSPSAAAPSATGGESGSADKAPETDADGNPLQNDDDDEDDGANL
SLAAMEASLKPQVLETLEAIARDYEELAHMQDQRMSATLNEDGSFSTNDESAYQKLRGEI
VVLVNSLHLHNNRIEALVDQLYGINRRIVTIDSGMVKLADAARINRREFVDAYRGSELDP
AWIDRMSENKGRGWQALFERSMDNVEKLRGDMAEVGQYVGVDIEEFRRIVNQVQRGEREA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELADKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggacgaagatagctctcgcgacgaaagccaggaaaacgcccactcgctc
gatatcagccagacggcggtcaagaagatgatcgccgaggcgaaagagcgcggctatatc
acctatgaccagctgaacaatgttctgccgcccgatcaggtcagctctgaccagatcgag
gatgtgatgtcgatgctgtccgaaatgggcatccaggtcgtcgagaacgaagaagagggc
gaagacggcgatagcggcggcgaggtggtgaccacctcgaattcgcgcgaggtcgcagtg
gcgacgaccgagaccgagaaactcgaccgcacagacgatccggtgcgtatgtatctgcgc
gaaatgggatcggtcgagctgctctcgcgcgagggcgagatcgccatcgccaagcggatc
gaggccgggcgcaacaccatgatcgccgggctgtgcgaaagcccgctgaccttcaaggcg
atcaccatgtggcggcaggaacttctggacgaggatattctgctgcgcgacgtgatcgac
ctggagaccaccttcggtcagtcgatggaggatggcgacgaagaagagctttccccctct
gcggccgcgccatccgccaccggcggcgaaagcggctctgccgacaaggcgccggaaacc
gatgccgacggcaaccctctgcaaaacgacgatgatgacgaggatgacggcgccaatctg
tcgctcgccgcgatggaagcgagcctcaagccgcaggtgctggaaacgctggaggccatt
gcccgcgactatgaagagctggcccatatgcaggatcagcgcatgtcggcgacgctgaac
gaggatggcagcttctcgaccaacgatgaatcggcctatcagaagctgcgcggcgaaatc
gtcgtgctggtgaactctttacatcttcataacaaccgcatcgaagcgctcgtcgatcag
ctttacgggatcaaccgccggatcgtgaccatcgattccggcatggtgaagctggccgat
gccgcgcgcatcaaccggcgtgaattcgtcgatgcctaccgcggctcggagctggacccg
gcctggatcgaccgcatgtccgaaaacaagggccgcggctggcaggcgctgttcgagcgc
agcatggataacgtcgaaaagctgcgcggcgacatggccgaggtcggccaatatgtcggc
gtcgatatcgaggaattccgtcgcatcgtgaaccaggtgcagcgcggtgagcgcgaggcg
cgtcaggccaagaaggaaatggtcgaggcgaatctgcgtctggtgatctcgatcgccaag
aaatacacgaacaggggcctgcaattccttgatctcattcaggaaggcaatatcggcctg
atgaaggcggtggataaattcgaatatcgccgcggctataaattctccacctatgcgaca
tggtggatccggcaggcgatcacccggtccatcgccgatcaggcccgcacgatccgcatc
ccggtccatatgatcgaaaccatcaacaagctggtgcggacgggtcgccagatgctgcac
gagatcggccgcgagccgacgcccgaggaactggccgacaagctccagatgccgctggaa
aaggtccgcaaggtgatgaagatcgccaaggagccgatcagccttgaaacgcccatcggc
gacgaggaagacagccagctcggcgatttcatcgaggacaagaacgcggttcttccgctg
gattccgccattcaggaaaatctgaaggaaaccacaacccgcgttctggccagcctgacc
ccgcgcgaggaacgggttctgcggatgcgtttcggcatcggcatgaacaccgatcacacg
ctggaagaggtcggccagcagttcagcgtcacccgcgaacggatccgccagatcgaggcc
aaggcgctgcgcaagctgaagcacccgtcccgctcgcggaaactgcgcagtttcctcgac
cagtaa
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integrated database retrieval system
