Paracoccus sediminicola: PAF18_05520
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Entry
PAF18_05520 CDS
T09284
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pdim
Paracoccus sediminicola
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pdim01002
]
PAF18_05520
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdim01011
]
PAF18_05520
Peptidases and inhibitors [BR:
pdim01002
]
Cysteine peptidases
Family C82
PAF18_05520
Peptidoglycan biosynthesis and degradation proteins [BR:
pdim01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
PAF18_05520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
TIP39
Motif
Other DBs
NCBI-ProteinID:
WBU57885
LinkDB
All DBs
Position
complement(1116623..1118155)
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AA seq
510 aa
AA seq
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MPLAAAAMPAPKLDFSEFEMRLAQEVAPDPGLSAFYGAHQLKPVFVGAEAAPRRAALIDA
IATAPEHGLPPARYDAVGLSRAGQAEDVATELLFARALSRWADDVSNGLVEPSRTDSMNK
RQVVPVDMAALLDQFTRGDPARALDTLPPQDPTYLRLKDMLSDQARLVAPAGTPEVAEGL
YKRGVSGPDVANLRARLAAIGFTSEAAGDEQLFDDSLADAVSRYQDAAGLPVDGVAGPKT
LAQLNGTTTGPQTRRLMIAMERMRWLNGHDLNARMIWVNIPSYIVEIREGGDTVFQTRSV
VGQPDPDWETPEFSDTMEFVVPNPYWNVPRSITAESYLPKLKADRNAVSHLEVVDRKGRK
VSRENIDFGKYTGSNFPYYLRQKPSADNALGRVKFMFPNKYNIYLHDTPAKGLFSNSSRA
ASHGCVRLADPFDLAYQLLRSNSDDPRGYFQRVLDQGEERWIKLKEPLPVHLVYFTALPG
PDGGLRTYRDVYGRDATLWQAMRKAAEAGS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
gtgccgctggccgcggccgccatgcccgcgcccaagctggatttctctgaattcgagatg
cgtctcgcacaggaggtcgcgcccgatccggggctatcggccttctatggcgcgcatcag
ctcaagcccgtcttcgtcggcgccgaggccgcgccgcggcgcgcggcgctgatcgacgcc
atagccactgcacccgagcacggattgccgcccgcgcgctatgacgcggtggggctgtcc
cgcgccggacaggccgaggatgtcgcgaccgagctgcttttcgcgcgggcattgtcgcga
tgggccgacgatgtctcgaacgggcttgtcgagccgagccgcaccgattccatgaacaag
cgccaggtcgtgcctgtggatatggccgcgctgctcgatcagttcacccgtggcgatccg
gcgcgcgcgctcgacacactgccgccgcaggacccgacctatctccgcctcaaggacatg
ctgtccgatcaggcgcgtctcgtggcgcccgccggcacgcccgaagtggccgaggggctt
tacaagcgcggtgtgagcgggcccgacgtggcaaatctgcgcgcccggctggcggcgatc
ggttttaccagcgaagctgcgggggatgagcagcttttcgacgactcgctcgccgatgcc
gtgtcccgctatcaggatgcggcggggctgccggtcgacggggtggccgggccgaaaacc
ctggcgcagctgaacggcacaacgaccgggccgcaaacccggcggctgatgatcgcgatg
gagcggatgcgctggctcaacgggcacgacctcaatgcccgcatgatctgggtgaatatc
ccgagctatatcgtcgagatccgcgagggcggcgacaccgtattccagacccgcagcgtg
gtcggccagcccgatcccgattgggagacgccagaattcagcgacacgatggagttcgtc
gttcccaacccctattggaatgtgccgcgctcgatcacggcggaatcctatctgccgaaa
ctcaaggcggaccggaatgccgtttcccatctcgaggtggttgaccgcaaggggcgcaag
gtctcacgcgagaatatcgatttcgggaaatataccggcagcaacttcccctattatctg
cgccagaagccgtcggcggataatgcgcttggccgggtgaagttcatgttcccgaacaag
tacaatatttatctgcacgacaccccggccaaagggctgttcagcaattccagccgtgcc
gcgtcgcatggctgcgtgcggctcgccgatcccttcgatctggcctatcagctcttgcgg
agcaacagcgacgatccgcgcggttatttccagcgggtgctggatcagggcgaggagcgc
tggatcaagctgaaagagccgcttccggtgcatctggtctatttcaccgcgcttccgggc
ccggatggcgggctgcggacctatcgtgacgtgtatgggcgcgatgcgacgctgtggcag
gcgatgcggaaggctgccgaggccggaagctag
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