Paracoccus sediminicola: PAF18_06595
Help
Entry
PAF18_06595 CDS
T09284
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAF18_06595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_06595 (mfd)
Enzymes [BR:
pdim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAF18_06595 (mfd)
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PAF18_06595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
AAA_30
AAA_16
RecG_dom3_C
SecA_DEAD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WBU58088
LinkDB
All DBs
Position
complement(1337985..1341449)
Genome browser
AA seq
1154 aa
AA seq
DB search
MADQITLSGAPSGYDAALLAREAERGPVIHIARDDRRAEAMREGLRFFAPDLTVLEFPAW
DTTPYDRVSPASEVMAARMATLAMLAHQAVPGRFVVLATLNAALQRVPPRDTVARASFTA
RVGDRIDEGGLRGWLARMGFAQAPTVTEPGDYAIRGGIIDIYPPGPSGPIRLDLFGDVLD
SARRFDPETQRSAGKLDRLELVPMSEVILDEDAITRFRTTYRAEYGGGANDPLYEAVSAG
RKLAGVEHWLPWFHERLDSIFDYLPEAAVMLDDRLDQVREARWEMIREQYNARREAAGRR
VGETVYRPVAPEALFAGDEEWAGWLSDRRVLLLSVNAAPPGPGVLDAGGKVGRNFAPERQ
AEQLDLFGALAAHLRDLRKTHRVVIASFSDGARERLRGLIADEGVEGATDISRLSDLPDR
PGALGLTVWPLEEGFTADGSAAGKLAVISEQDVLGDRLIRGARKRRRAENFLKDTTALTP
GDLVVHVEHGIGRYKGLETMTAGGVPHDCVALEYAGGDRLFLPVENIELLSRYGHEEGLL
DRLGGGAWQARKARLKERIRLIADRLMRVAAERLLRTAPVLEPEHHDWESFSARFPYTET
DDQMAAIDDVMADLATGRPMDRLIVGDVGFGKTEVAMRAAFIAASQGKQVAVIAPTTLLA
RQHARSFADRFRGTALNVRALSRFVSAKEAAATRAGLADGSVDIVVGTHAVLAKAVKFRN
LGLLVIDEEQHFGVSHKERLKELRSDVHVLTMTATPIPRTLQLSLSGVRDLSIIGTPPVD
RLAIRTYVSEFDSVTIREALLREKYRGGQSFFVVPRIADLPEVEDWLREHVPEISFVVAH
GQMAAGDLDQRMNAFYDGQYDVLLATTIVESGLDIPTANTMVVWRADIYGLAQLYQIRGR
VGRSRTRAYCYLTTKPRAPLTPQAERRLKFLGNIDGLGAGFNLASQDLDLRGAGNLLGEE
QSGHIKEVGFELYQAMLEETIAKLKSGELEGTPEDEWAPQLNLGVPVTIPESYIADLDVR
LGLYRRLSDITTKVEMEGFAAELHDRFGPVPREVTMLMNVIRIKAMAKRANIARLDAGPK
GATVQFHNDKFPNPAGLVEFLTDQRDLAKVSDNKIVIRRDWKSDGERIKGAYAIARDLAV
KAKAAKDAPARSAS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcagattaccctctccggcgcgccttcgggctatgacgccgcgcttctcgcg
cgtgaggccgagcgcggccccgtcatccatatcgcccgcgacgaccgccgggccgaggcg
atgcgcgaggggctgcgtttcttcgcacccgatctgacggtcctggagtttcccgcctgg
gacaccacgccctatgaccgcgtctcgcccgcctccgaggtgatggcggcgcggatggcg
acgctggccatgctggcgcatcaggccgtgccggggcggttcgtggtgctggccacgctg
aacgccgcgctgcaaagggtgccgcctcgtgacacggtggcaagggccagcttcaccgcc
cgtgtcggcgaccggatcgacgagggcggcttgcgcggatggctggcgcggatgggcttt
gcgcaggcgccgacggtgaccgagccgggggattacgccattcgcggcggcatcatcgac
atctacccgcccggaccctcgggcccgatccggctggacctgttcggcgatgtgctggac
agcgcccgccgcttcgatcccgaaacgcagcgcagcgccggcaagctggaccggctggaa
ctggtgccgatgtccgaggtgatcctcgacgaggacgccatcacccggttccgcaccacc
tatcgcgccgaatatggcggcggggccaatgatccgctttacgaagccgtcagcgcgggc
cgcaagctggccggggtggaacactggctgccctggttccatgaacggttggacagcatt
ttcgactatctccccgaggcggcggtcatgctggatgaccgtctggatcaggtccgcgaa
gcgcggtgggagatgatccgcgaacaatataatgcccggcgcgaggcggcggggcggcgc
gtgggcgagaccgtctatcgccccgtcgcgcccgaggctctgtttgccggtgacgaggaa
tgggcgggctggctgtcggatcgccgggtgctgcttctgtcggtgaatgccgccccgccc
ggtcccggcgtgctggatgcgggcggcaaggtgggccgcaacttcgcacccgaacggcag
gccgagcagcttgatctgttcggagcgcttgccgcgcatctgcgcgacctgcgcaagacc
catcgcgtcgtcatcgccagcttctcggacggcgcgcgcgaaaggctgcgcggcctgatc
gcggatgagggcgtcgaaggcgccacggatatctcgcggctttcggacctgcccgatcgg
cccggcgcgctcgggctgacggtctggccgctggaggaaggcttcaccgccgatggcagc
gcggcaggcaagcttgccgtgatctcggaacaggatgtgctgggcgaccggctgatccgg
ggcgcgcggaaacggcggcgggccgagaatttcctgaaggacaccaccgcgctgacgccg
ggcgatctggtcgtgcatgtcgaacatggaatcggtcgctacaaggggctggaaaccatg
accgccgggggtgtgccgcatgattgcgtggcgcttgaatatgcgggcggagaccggctg
ttcctgccggtcgagaatatcgaactgctcagccgttacggtcatgaggagggtctgctg
gaccgtctgggtggcggggcgtggcaggcccgcaaggcacggctgaaggaacggatccgc
ctgatcgccgaccggctgatgcgggtcgcggcggaacgcctgttgcgcaccgccccggtg
ctggagccggaacatcacgactgggaaagcttctcggcgcgcttcccctataccgaaacc
gacgaccagatggccgcgattgacgatgtgatggcggatctggcgacggggcggccgatg
gaccggctgatcgtgggcgatgtcggcttcggcaagaccgaggtggcgatgcgcgccgcc
ttcatcgccgcaagccagggcaagcaggtcgcggtgatcgcgccgaccacattgctggcc
cggcaacatgcccgcagctttgccgaccgcttccgcggcacggcgctgaacgtgcgcgcg
ctgtcgcggttcgtgtccgccaaggaggccgcggcgacgcgggcagggctggccgatggc
agcgtcgatatcgtcgtcggcacccatgcggtgctggccaaggcggtgaaattccgcaat
ctcggcctgctggtgatcgacgaggaacagcatttcggcgtctcgcacaaggagcggctg
aaagagctgcgcagcgatgtgcatgtgctgaccatgaccgcgacgccgatcccgcgcacg
ctgcaattgtcgctgtcgggcgtgcgcgacctgtcgatcatcggcacgcctccggtggac
cgtctggcgatccgcacctatgtgtccgagttcgacagcgttacgatccgcgaggcgctg
ctgcgcgagaaatatcgcggcgggcagagcttctttgtcgtcccccgcatcgccgatctg
ccggaagtcgaggactggctgcgcgagcatgtacccgagatcagctttgtcgtcgcgcat
ggccagatggctgcgggcgatctggatcagcggatgaacgccttttatgacgggcaatat
gacgtgctgctggcgacgaccatcgtggaaagcgggctggatattccgaccgccaacaca
atggtggtctggcgggcggatatttacggcctcgcccagctttaccagatccggggccgg
gtcggacgctcgcgcacccgcgcctattgctacctgaccacgaaaccccgcgcgccgctg
accccgcaggccgagcgccggctgaaatttcttggcaatatcgacgggttgggggcaggg
tttaacctggcctcgcaggatctggaccttcgcggtgcagggaatctgctgggtgaggag
caatccggccatatcaaggaagtcggcttcgaactctatcaggcgatgctggaagagacc
atcgccaagctgaaatccggcgagctggagggcacgcccgaagatgaatgggccccgcag
ctgaatctgggcgtgccggtgacgatcccggaaagctacatcgcggatctggatgtgcgg
cttggcctgtaccggcggctctcggacatcaccaccaaggtcgagatggagggcttcgcg
gccgagcttcacgaccgtttcgggccggtcccgcgcgaggtgaccatgctgatgaatgtc
atccgcatcaaggcgatggccaagcgcgccaatattgcgcggctcgatgccgggccgaaa
ggggcgacggtccagttccacaacgacaagttcccgaaccccgccggtctggtcgagttc
ctaaccgatcagcgcgatctggccaaggtcagcgacaacaagatcgtcattcgccgcgac
tggaaaagcgacggcgagcggatcaagggtgcctatgcgattgcgcgggatctcgcggtg
aaggccaaggcggcgaaggacgctccggcacgcagcgcgtcctga
DBGET
integrated database retrieval system
