Paracoccus sediminicola: PAF18_06780
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Entry
PAF18_06780 CDS
T09284
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03030
DNA replication
pdim03430
Mismatch repair
pdim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAF18_06780
03430 Mismatch repair
PAF18_06780
03440 Homologous recombination
PAF18_06780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdim03032
]
PAF18_06780
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_06780
Enzymes [BR:
pdim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PAF18_06780
DNA replication proteins [BR:
pdim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PAF18_06780
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PAF18_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
PAS
Motif
Other DBs
NCBI-ProteinID:
WBU58121
LinkDB
All DBs
Position
complement(1380492..1382453)
Genome browser
AA seq
653 aa
AA seq
DB search
MLSRLSLRMRIFLIFAGLAAALIAVLALGLAAAAAMLQSAGEGGAPLPLGLADALAIAAL
IAGLGGLGLVVWVWYLFDSHVARPVERLSGAILTGAMPADGEGRYLADLAPAARAASRRA
TGAGRAKPEGGKGARETEMLEHILSDIGAGAVLSGADGRVLFFNAAAAQLLPGLALDRKL
RRFLRGGGLDAAEARIAEGAEASDVALIGADGARLSGRIRRLAGAEAAMLAILRPARREP
VPPRAPLEALRRHAATLTPLLDHLDAPLPPELRRAICTEARGMAAALRDLDAALTPPAPR
QRRVAAEELARGLGLPLGEVAPVTLAADGWQIGGLVAMLGQRLAEKGRPPAAAIRSNGAE
AMLHLRWRGPALPMDELDRWLDSAPDPDHPELSGADILAAHGTGIWPEPDSETHARLALP
LAISATPRAARPSVTYDFALARSGPPDDRPLDALTCVVFDTETTGLSLSDRIVQIAGLRI
AGGQLTGERFETLVNPGRAIPPASTRIHRITDGMVADAPDMTQALRRFHDFAEDAVLIAH
NAPFDMGLLRAAEAETGQHFPNRVMDTVLLSAMIWGQGATHSLDAICARLHIALPAHLRH
SAMGDAEATAQAYLRMLPALEAKGLTCFAEVLEQAQKHRRLLSDANLAAAHGN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgctgagccggctgtctctgcggatgcgaatcttcctgatcttcgccgggcttgccgcc
gcgctgatcgccgtgctggcgcttggcctggcggcggctgcggcgatgctgcagagtgca
ggggaaggcggcgcgccattgccgctcgggctggccgatgcgctggccattgcggcgctg
atcgcggggttgggcgggctcgggctggtggtctgggtctggtatctcttcgatagccat
gtcgcccgcccggtcgagcggctgtcgggcgcgatcctgaccggcgccatgcccgccgac
ggagaggggcgctatctcgccgatctcgcaccggcggcgcgggcggcgtcgcggcgcgcg
accggggccgggcgggcaaagcccgaaggcgggaagggcgcccgcgagaccgagatgctt
gaacatatcctctcggatatcggcgcgggcgcagttctcagcggggctgatggccgggtg
ctgttcttcaacgcggcggccgcgcagcttttgccggggctggcgctcgaccggaagctg
cggcgcttcctgcgcggcggcgggctggatgcggccgaagcccgcatcgccgagggggcc
gaggccagcgatgtggcgctgatcggcgcggacggggcgcggctgagcgggcgcatccgg
cggctggcaggtgcagaggccgccatgctggccatcttgcgcccggcgcgccgcgagccg
gttccgccgcgcgcgccgctcgaggcgctgcgtcgtcatgccgcgacgctgacgccgctg
ctcgatcatctcgacgcgcctttgccgccggagctgcgccgcgccatctgcaccgaggca
cgcgggatggctgcggcgctgcgcgatctggatgcggcgctgaccccgcccgccccgcgt
cagcgccgggtcgcggcggaagagcttgcgcgcgggctcggccttccgctgggagaggtt
gcgccggtaacgcttgccgccgatggctggcagatcggcggcctggtcgcgatgctgggg
cagcgcctggccgaaaagggccgtccgcccgccgccgcgatccgcagcaacggcgccgag
gcgatgctgcatctgagatggcgcggtccggcgctgccgatggatgagctggatcgctgg
ctggactccgcgcccgatccggatcatcccgaactcagcggcgccgatattcttgccgcg
catggcaccggcatctggcctgagcccgacagcgagacccatgcccggctggcattgccg
ctggcgatatcggccacgccgcgcgcggcccggccgtcagtgacctatgatttcgcgctg
gcccgcagcggcccgcccgacgaccggcctctcgacgcgctgacctgcgtggttttcgac
accgaaacgaccggtctgtcgctgtcggatcgtatcgtccagatcgccgggctgcgcatc
gccgggggacagctgaccggagagcgcttcgaaaccctcgtcaatcccggccgcgcgatc
ccgcccgcctcgacccgcatccaccgcatcaccgacgggatggtcgccgatgcgcccgat
atgacgcaagcgctgcgccgctttcacgactttgccgaggatgcggtgctcatcgcccat
aacgcgcccttcgacatggggctgctgcgcgccgccgaggccgagaccggtcagcacttt
cccaaccgggtgatggatacggtgctgctgtccgcgatgatctgggggcagggggcgacg
cacagcctggatgcgatttgcgcgcggcttcacatcgcgctgcccgcccatctgcgccac
agcgcgatgggcgatgccgaagccaccgcgcaggcctatctgcgaatgttgcccgcgctc
gaggccaagggtctcacctgtttcgccgaggtgctggaacaggcccagaaacatcgccgc
ctgctgagcgacgccaatcttgccgccgcgcatggcaactga
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