Paracoccus sediminicola: PAF18_08325
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Entry
PAF18_08325 CDS
T09284
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim00550
Peptidoglycan biosynthesis
pdim01100
Metabolic pathways
pdim01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PAF18_08325 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PAF18_08325 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdim01011
]
PAF18_08325 (mrdA)
Enzymes [BR:
pdim01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
PAF18_08325 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
pdim01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
PAF18_08325 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
WBU55537
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Position
1687244..1689190
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AA seq
648 aa
AA seq
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MRKSPKDVIDSARMISRRGVMLGAAQAAVIGTLAWRMRSMQIEHADEYRLLADGNSIKIR
LLPPVRGLIHDRNGRVIAGNEQNYRATITRELAGDVDSVVAKLRRLVAMSDEEAAELLET
ISKRSAITPVSIGEHLSWDEFSSIAVNAPALPGVQPESVLSRVYPQRGDFAHVLGYVGRV
SDYDLSKMEDPDPVLMLPEFQFGKVGVESKLEPILRGKAGTRKVEVNAAGREMRELSRQE
GQQGATVQMTLDAGLQNYAVQRLGEESAAAVVIDVTNGDIMAIASAPVFDPNLFVRGISS
ADYRALMEHDHRPLADKTVQGVYPPGSTFKMATLLAGLEAGVINGGSRFFCNGALEVAGR
KFHCWSRGGHGHVDPVESLQRSCDVFYYETARLVGIDRIAAMARRLGMGVEHELPMSAVA
AGIAPDKAWKHERYGSSWVIGDSLNASIGQGFVLASPLQLAVMSARVATGREVRPRLVRA
VDGIPEPVAEFADLGIPENFLGIARRGMDAVMNSSSGTARSSRIVAEEWRMAGKTGTSQV
RNITAAERARGVIRNDQLPWNRRDHALFVCFAPYDAPKYAVSVVVEHGGGGSAVAAPIAR
DILLYALAGGVPPLTAYPDGQRAGIEEMHRNMRLYNPVATSSSGSTRA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaatcgcccaaggatgtgatcgacagcgcgcggatgatctcgcgccgcggggtg
atgctgggcgcggcgcaggcagcggtgatcggcacgctggcctggcggatgcgttcgatg
cagatcgagcatgccgatgaatatcggctgctggcggatggcaactcgatcaagatccgg
ctgctgccgccggtgcgcgggctgatccatgaccgcaatggccgcgtcatcgccgggaac
gagcagaattaccgcgccaccatcacccgcgaactggccggtgatgtagacagcgtcgtc
gccaagctgcgccgtctggtggcgatgtcggacgaggaagccgccgaattgctggagacg
atctcgaagcgcagcgccatcaccccggtcagcattggcgaacatctgagctgggacgag
ttcagctcgatcgcggtgaacgcccctgccctgcctggcgtgcagccggaatcggtgctg
tcgcgcgtctatccgcagcgcggcgatttcgcgcatgtgcttggctatgtcgggcgggtg
tcggattacgacctgtcgaagatggaagaccccgatcccgtgctgatgctgccggagttt
cagttcggcaaggtcggcgtggaaagcaagctggaaccgatcctgcgcggcaaggccggc
acgcggaaggtcgaggtcaacgccgccgggcgcgaaatgcgagagctgtcgcggcaggag
ggtcagcagggcgccacggttcagatgacgctggatgccgggcttcagaactatgccgtg
cagcggctgggagaggaatctgcagccgcggtggtcatcgatgtgaccaatggcgacatc
atggcgattgcctcggcaccggtcttcgatcccaacctgttcgtgcgcgggatctcgtcg
gcggattaccgggcgctgatggaacatgaccaccgcccgctggccgacaagaccgtgcag
ggcgtctatccgccgggctctaccttcaagatggcgacgcttctggccgggctcgaggcc
ggggtcatcaatggcggctctcgtttcttctgcaacggcgcgctcgaggtggcgggccgc
aagttccattgctggagccggggtggccatggccatgtcgatccggtcgaaagcctgcaa
cgctcttgcgacgtgttctattacgaaaccgcgcggctggtcgggatcgaccgtatcgcc
gcgatggcgcgccgcttgggtatgggggtcgagcacgagctgcccatgtcggctgtcgcc
gcaggcatcgcgcccgacaaggcctggaaacatgagcgctatggctcatcctgggtgatc
ggggattccctgaacgcctcgatcggtcaaggcttcgtgctggcctctccgctgcaactg
gcggtgatgtcggcccgcgtcgcgacggggcgcgaggtcaggccaaggctcgtgcgcgcg
gtggatggcatccccgagccggttgcggaattcgccgatctcggcatccccgagaatttc
ctcggcatcgcacggcgcggcatggatgcggtgatgaacagcagcagcggcacggcgcgt
tcgtcccggatcgtggcagaggagtggcgcatggccggcaagaccggcaccagccaggtc
cgcaacatcaccgccgccgagcgcgcccgcggcgtcatccgcaacgaccagcttccgtgg
aaccgccgggaccacgcgctgttcgtctgttttgccccttacgacgcaccgaaatacgcg
gtgtcggtcgtggtcgaacatggcggtggcggctcggctgtggcggcaccgatcgcgcgc
gacattctgctttatgcgctggcgggcggtgtgcctccgctcaccgcttatccagacggt
cagcgcgcggggatcgaagagatgcaccgcaatatgcggctttataatccggtcgccaca
agcagcagcgggagcacgcgagcctga
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