Paracoccus sediminicola: PAF18_10010
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Entry
PAF18_10010 CDS
T09284
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAF18_10010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdim03019
]
PAF18_10010
03009 Ribosome biogenesis [BR:
pdim03009
]
PAF18_10010
Enzymes [BR:
pdim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAF18_10010
Messenger RNA biogenesis [BR:
pdim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAF18_10010
Ribosome biogenesis [BR:
pdim03009
]
Prokaryotic type
rRNA processing factors
PAF18_10010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WBU55837
LinkDB
All DBs
Position
complement(2022058..2024778)
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AA seq
906 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGTKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPAADRQALLEEERAYAEAVAAEESEQDKPEKGRGRRRRP
SKSAKAEKAETGDESVASAEIPGMEVVDHDADDDRDDGNTADKRDGENGANGDAGDDEPR
GADAAEKDDSIESVADEDVTEEIRVPKKPRARRYKIQEVIKVRQILLVQVVKEERGNKGA
ALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAGELKVPQGAGLIIRTAGS
QRTRTEIKRDYEYLMRLWEQIRELTFASVAPAPIYEEGDLIKRTIRDLYSREIDEVLVEG
DRGYRTAKDFMKMIMPSHAKNVKHYNDPMPLYARYQVESYLGGMFNPTVQLKSGGYIVIG
VTEALVAIDVNSGRATKEGSIEDTATKTNLEAADEIARQLRLRDLAGLIVIDFIDMDERK
NNSAVEKRLKDRLKTDRARIQVGKISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIR
SDDSLALTILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIAVIEARYGMSVRVEA
DPALISPDFAIEKFKSATRVVPDAAAPVVSVDAQLMAQIDDDESDETAEDERDDRDDSTE
RGEDRSDDDGGNRGKRRRRRRRRGGKDRNDQGDSRGSDENRDDNADDGGNRQRDAESDVP
AGEISAKDDGNSRSDSEDEADKPKSRSRSRSRTRRRPEAAEAGGQDDAGTAPAAAASSAA
ANVVDLRDLPTKAETSPAEADQPAENGSSVQEGAANDAAAITSSEDAAPGENPPSQAADD
AADAPDDAAVADRAEPANAENVEGDHQPDAASSSAEAAPARPAKAEAQPEPETPPRKKRR
GWWSIG
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgcgacacacgcggaagaaacgcgtgtcgtcgtcgtg
gacggaaccaaagtcgaggaatttgatttcgagacggtcaacaagcggcagcttgctggc
aatatctatctggcaaaagtgacgcgggtcgaaccctcgcttcaggccgccttcgtcgat
tacggcggaaaccggcacggtttcctcgccttcgccgagatccatccggattactaccag
atccccgccgctgaccgccaggcgctgcttgaggaagagcgcgcctatgccgaagccgtc
gcggccgaggagagcgagcaggacaagcccgagaagggccggggccgccggcgcaggccg
tcgaaatcggcaaaggccgaaaaggccgagaccggcgatgaaagcgtcgcctccgccgag
atacccggcatggaggtcgtcgatcacgacgccgacgatgatcgcgatgacggcaacacc
gccgacaagcgcgacggagaaaacggcgcgaacggcgatgcgggcgacgacgaaccgcgc
ggagccgatgcggcggaaaaggacgacagcatcgaatccgtggccgacgaggacgtgacc
gaagagatccgcgttccgaagaagccgcgcgcccgccgctacaagatccaggaggtcatc
aaggtccgccagatcctgctggtccaggtcgtcaaggaagagcgtggcaacaagggtgcg
gctctgacgacctatctgtctctggcagggcgctactgcgtactgatgcccaacaccgca
cgtggcggcggcatttcccgcaagatcaccaatgccgcggaccgcaagaagctaaaggac
atcgccggagagcttaaggtgccgcagggtgccgggcttattatccggaccgccggcagt
cagcgcacccggaccgaaatcaagcgcgactatgaatatctcatgcggctttgggaacag
atccgcgagctgaccttcgcctcggtggcgccagcgccgatctatgaggaaggcgacctt
atcaagcgcacgatccgcgacctttacagccgcgagattgacgaggttctggtagagggc
gatcgcggttaccgcaccgcgaaggatttcatgaagatgatcatgccgtcccacgccaag
aacgtgaaacattataatgatccgatgccgctttacgcccgctatcaggtggaaagctat
ctcggcggcatgttcaatccgaccgttcagttgaaatcgggcggctatatcgtcatcggc
gtgaccgaggcgcttgtggccatcgacgtgaactcgggccgggccaccaaggaaggcagc
atcgaggatacggcgaccaagaccaaccttgaagcggccgatgaaatcgcgcggcaattg
cggctgcgcgaccttgccgggctgatcgtgatcgacttcatcgacatggatgagcgcaag
aataactcggctgtcgaaaagcggctgaaagatcggctgaagaccgaccgggcgcggatt
caggtcggcaagatctcgggcttcggcctgatggaaatgagccgtcagcggctgcgcccg
gggatgctggaatcgacgacgcagccctgtgcgcattgtcacggcaccgggctgatccgc
tcggatgacagcctcgcgctgaccatcctgcgcgccatcgaggaagagggcacgcgcaag
cgctctcgcgaggtgctggtcaaggcgccggtcgcagtggcgaatttcctcatgaacgcc
aagcgcgagcatatcgccgtgatcgaggcacgttatgggatgtctgtgcgggtcgaggcg
gatcccgcgctgatctcgcccgatttcgccatcgaaaagttcaagagcgcgacccgtgtc
gtgccggatgccgccgccccggtggtttcggtcgatgcgcagctcatggcgcagatcgac
gacgacgagagcgatgaaaccgccgaggacgagcgcgacgaccgcgacgacagcaccgag
cgcggcgaggaccgttcggatgacgatggcggcaatcgcggcaagcgccgccgccgccgc
cgtcggcggggtggcaaagatcgcaacgatcagggcgattcgcgcggtagtgacgaaaat
cgcgacgacaacgccgatgatggcgggaaccgccagcgggacgccgaatccgatgttccg
gctggcgagatcagcgccaaggatgacggcaacagccgcagcgacagcgaggatgaggcc
gataagccgaaatcacgcagccgctcgcgaagccgcacacgccgtcgcccggaggccgca
gaggccggggggcaggatgatgcgggcacggcaccggccgcagcagcatcctccgctgcg
gcgaatgtcgtggatctgcgcgatctgcccaccaaggcggagacatcgccggctgaggct
gaccagccggcagagaatgggtcttcggtgcaggagggggccgcgaatgacgcggcggcg
atcacgagctccgaggatgccgcgccgggcgaaaaccccccgtcgcaggccgccgatgat
gccgctgacgcaccggacgatgccgccgtggccgacagggcagagccagcgaatgcagaa
aatgtcgagggcgatcatcagcccgacgccgcttcgtcatcggcagaggccgcgcccgcc
cggcccgccaaagccgaggctcagcccgagccagaaaccccgccgcgcaagaagcgccgt
ggttggtggtccattggctga
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