Paracoccus sediminicola: PAF18_10190
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Entry
PAF18_10190 CDS
T09284
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAF18_10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdim03019
]
PAF18_10190
Enzymes [BR:
pdim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAF18_10190
Messenger RNA biogenesis [BR:
pdim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAF18_10190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
WBU58392
LinkDB
All DBs
Position
2060977..2062218
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AA seq
413 aa
AA seq
DB search
MGIDARINANLAPMGLTEPTPIQKQSIPHIVQGTDILGLAQTGSGKTAAFSLPMLTRLLA
HGRKPEPGTCRALILAPTRELATQIAQAVDSFAEGTPIRSFRVVGGASINVQIQRIERGV
DVLIATPGRLIDLMDRKAVDLSKTEYLVLDEADQMLDIGFIHALRRIAKTLPAQRQTLLF
SATMPKLMEELAGTYLNNPERVQVNPPGKAAEKIDQGVHFVNQGDKAALLAEYMSKHPGE
LAIVFGRTKYGSEKLAKLLDKWGFSVAAIHGNKSQGQRERALSSFREGKTQVLVATDVAA
RGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCAPGEIGELRAIEKAMKA
AIPVIGGEAPPEQKPATRGRGRGGNRPRQGGNAAPSKRPARRPSRQPKSRQNA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgacgcgcggatcaacgccaacctggccccgatggggctgaccgagccgacg
ccgatccagaagcaatccattccgcatatcgtgcaaggcactgatatcctcggacttgcc
cagaccggatcgggcaagacagcggccttctcgctgcccatgctgacccggttgctggcg
catggccgcaagcccgagcccggcacctgccgcgccctgatccttgcacccacgcgcgaa
ctcgccacccagatcgcgcaggccgtggacagcttcgccgagggcaccccgatccgcagc
ttccgcgtcgtcggcggcgcctcgatcaacgtgcagatccagcggatcgagcgtggggtc
gacgtgctgatcgccacgccgggccgcctgatcgacctgatggaccgcaaggcggtggac
ctgtcaaaaaccgaatatctggttctcgacgaggccgaccagatgctggatatcggcttt
atccacgcgctgcgccgaatcgcgaaaaccttgcctgcgcagcgccagacgctgctgttc
tcggccaccatgccgaagctgatggaagagctcgccgggacctatctgaacaaccccgag
cgtgtgcaggtgaacccgccgggcaaggccgccgaaaagatcgaccagggcgtgcatttc
gtcaatcagggcgacaaggccgccttgctggccgaatatatgtccaagcatccgggcgag
ctggccatcgtcttcggccgcaccaaatacggctcggagaaactggccaagctgctcgac
aaatggggcttctcggtcgccgcgatccacggcaataagagccagggccagcgggaacgc
gcgctgagctcgttccgtgagggcaagacgcaggtgctggtggcgaccgatgtcgccgcg
cgggggcttgatatcccgcaagtcgcgcatgtctataattacgacctgccgaacgtgccc
gaaaactatgtccaccgcatcggccgcaccgcacgcgccgggcgcgacgggcgcgccgtc
gccttctgcgcgccgggcgagatcggtgagcttcgtgccatcgaaaaggcgatgaaagcc
gcgatccctgtgatcggcggcgaggccccgcccgagcagaagccggctacgcgcgggcgt
ggccgagggggcaatcgtccgcggcagggcggcaatgcggcgccctcgaagcgcccggcc
cggcgcccttcgcgtcagcctaaaagccgtcagaacgcctga
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