Paracoccus sediminicola: PAF18_11300
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Entry
PAF18_11300 CDS
T09284
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdim
Paracoccus sediminicola
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdim03032
]
PAF18_11300
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_11300
Enzymes [BR:
pdim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PAF18_11300
DNA replication proteins [BR:
pdim03032
]
Prokaryotic type
DNA Topoisomerases
PAF18_11300
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PAF18_11300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CaMKII_AD
Motif
Other DBs
NCBI-ProteinID:
WBU56076
LinkDB
All DBs
Position
complement(2285975..2287039)
Genome browser
AA seq
354 aa
AA seq
DB search
MPKDQDSSIVDAEDAAVSAGLLYVNDDMPGITRVRAGKGFSYRDAKGNTIRDKAERKRLA
ALAIPPAYEDVWICPDPRGHIQATGRDAKGRKQYRYHPEFRELRDSAKYDHMLDFAAALP
KIRSKVRDDMGKRGLPAEKMLATIVWLLENTMIRVGNTGYAKDNKSHGLTTLRDRHVSFD
GSEIRFRFKGKGGKEWDLDIRNKRVAKIVRAAQDIPGQHLFQYLDEDGARHEIDSGDVND
YLREVSGREVTAKDFRTWTGTVLAALALSEFEKADSETAAKANVRDAIEDVAARLGNTPA
ICRKCYVHPQIIDAYMAQELKLELRDKIADDLKKPGLRPEEKQVLKFLKQRLKT
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggatcaggacagttccatcgtcgatgcagaggacgcggcggtcagcgccggc
ctgctgtatgtgaatgacgacatgccgggcatcacgcgtgtccgggccgggaaggggttt
tcctatcgcgacgcgaagggcaacacgatccgtgacaaggccgagcgcaagcggctggcc
gcgcttgccattccgccggcctatgaggatgtctggatctgccccgatccgcgtggccat
atccaggccaccgggcgtgacgcgaagggtcgcaagcagtatcgctatcacccggaattc
cgcgagctgcgcgactcggccaaatacgatcacatgctggatttcgcggcggcgctgccc
aagatccgcagcaaggtccgcgacgacatgggaaagcgtggcctgccggctgaaaagatg
ctcgcgaccatcgtgtggcttttggaaaacaccatgatccgcgtcggcaataccggctat
gccaaggacaacaagtcacacggtctgaccacgctgcgtgaccggcatgtcagctttgac
ggctcggaaatccggtttcgcttcaagggcaagggcggcaaggaatgggatctggatatc
cgcaacaagcgtgtcgccaagatcgtccgcgccgcgcaggatattcccggccagcatctg
ttccagtatctcgacgaggatggcgcgcgccacgagatcgactccggcgacgtgaatgat
tacctgcgcgaggtgtcgggacgtgaggtcacggcgaaggacttccgcacctggacgggc
acggtgctggcggcgctcgccctgtccgaatttgaaaaagccgacagcgagaccgccgcc
aaggccaatgtccgcgatgccatcgaggacgttgcggcacggcttggcaacacgcccgcg
atctgccggaaatgctatgtccacccccagattatcgacgcctatatggcgcaagaactg
aagctcgaactgcgcgacaagatcgctgacgacctgaaaaagcccggactgcggcccgag
gaaaagcaggttctcaaattcctgaagcagaggttgaagacatga
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