Paracoccus sediminicola: PAF18_13510
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Entry
PAF18_13510 CDS
T09284
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAF18_13510 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdim03019
]
PAF18_13510 (recQ)
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_13510 (recQ)
Enzymes [BR:
pdim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAF18_13510 (recQ)
Messenger RNA biogenesis [BR:
pdim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAF18_13510 (recQ)
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PAF18_13510 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
WBU56476
LinkDB
All DBs
Position
complement(2739868..2741907)
Genome browser
AA seq
679 aa
AA seq
DB search
MKDGAEQHLREIWGFDGFRPGQEEIVEAVAAGQDVLAIMPTGGGKSLCYQLPALLRDGVT
VVISPLIALMRDQVRGLREAGVAAGALTSGNTEAETDEVFSAIRDGALKMLYMAPERLAS
GGTLPLLRRAGVTAIAVDEAHCVSQWGHDFRPDYLRIGELKRALNVPLAAFTATADAETR
AEIVSRLFAGAEPLSFLRGFDRPNIHLAFQPKEGPRRQIMDFVAARPGQSGIIYCGSRAK
TETLASALNAAGHPALHYHGGMEPDARREAEARFQREDGLIVAATVAFGMGIDKPDIRWV
AHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRMRRAQIDEGLAENDRKTADHAR
LNALLGLAEATSCRRVKLLGYFGDEAEPCGNCDLCDTPPKLFDATKPVQMALSAMLRTGE
WFGAGHVIDVLTGNETDKVRERGHGKLPTFGVGSGWSRPQWQAIIRQMMGRDLCRPDPSR
HGALHITDAAHPILRGEAEVTLREDSIKRAKPAFTPKMQVAEEDAPLFSALKAKRRALAE
AQRVPAYVIFPDRTLQEMAERRPQTLDEMARINGVGAKKLDSYGDAFLEVIAGEATPMHP
QRRALAGREAGTLFDRLAETQMRLVRGEDGTEKPLSCSTGQLRRIAENRPASREALSRLL
DEARLDRFGDAFIDDIISH
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacggggcagagcagcatctgcgcgagatctgggggtttgatggcttccgtccc
ggacaggaagaaatcgtcgaggccgtcgccgcggggcaggatgtcctggcgatcatgccc
acaggcggcggcaagtcgctttgctatcagcttcctgcactgctgcgcgatggagtcacc
gtggtgatctcgccgctgatcgcattgatgcgggatcaggttcgcgggcttcgagaagca
ggtgtcgcggcgggtgcgctgacctcaggcaataccgaggccgaaaccgatgaggtgttt
tcggccatccgcgacggcgcgctgaagatgctctacatggcgccagagcgtctggcctct
ggtgggacgctgccgttgctgcgccgggcgggtgtcaccgccatcgccgtggacgaagcg
cattgcgtcagtcagtggggtcatgatttccgccccgactatctgcgcattggcgagctg
aagcgcgcgctgaacgtgccgcttgccgccttcaccgccaccgccgatgccgaaacccgg
gccgagatcgtctcgcgcctttttgccggggcagagccgctgagttttctgcgcggcttc
gacaggcccaatatccacctcgcctttcagcccaaggagggcccgcgtcgccagatcatg
gatttcgttgccgcacggcccggccagtccggcatcatctattgcggaagccgcgccaag
accgaaacactggccagtgcgctgaacgcagcgggccacccggcgctgcattatcacggc
gggatggagcctgacgcgcgccgcgaggccgaggcaaggttccagcgcgaggacgggttg
atcgtcgccgccaccgtcgctttcggtatgggtatcgacaagcccgatattcgctgggtc
gcccatgccgatctgcccaaatccatcgaggcctattatcaggaaatcggacgcgcaggc
cgcgacggcgcgcccgccgagacgctgacgcttttcggtcccgacgacatccgcatgcgc
cgtgcccagatcgacgaagggctggccgagaatgaccgcaagacagccgatcatgcccgt
ctcaacgcgctgctcgggctggccgaggcgacctcgtgccgacgtgtgaagctgctcggc
tatttcggcgatgaggcagagccctgcggcaattgcgatctttgcgacacgccgccaaag
ctgttcgacgcgacgaagccggttcagatggcactttcggccatgctgcgcacgggtgag
tggttcggcgctggccacgtgatcgatgtgctcaccggcaacgagaccgacaaggtccga
gagcgcggacatggcaagctgcccactttcggcgtcggctccggctggtcgcgcccacaa
tggcaggcgatcatccgccagatgatgggccgcgacctgtgccgccccgatccgtcccgc
cacggcgcgctgcacatcaccgatgccgcccacccgatcctgcgcggcgaggccgaggtg
acgctgcgggaggacagcatcaagcgcgccaagcccgccttcacgccgaaaatgcaggtg
gcagaagaggacgcgccgctgttttccgcgctcaaggccaagcgacgtgccctggccgaa
gcgcagcgtgtgccggcctatgtgattttccccgaccgcacgcttcaggaaatggccgag
cgccgcccgcaaacactggacgagatggcgcggatcaacggcgtcggggccaagaagctg
gacagctatggcgacgcctttctcgaagtcatcgctggcgaggccacgcccatgcacccg
caacgccgtgcgcttgccggacgcgaggcggggacactgtttgaccggctcgccgaaacc
cagatgcggcttgtgcggggcgaggacggcaccgaaaagccgctgagctgttctaccgga
cagctccgccgcatcgccgagaatcgccccgccagtcgcgaggccctgtcgcgcctgttg
gacgaagcgcgcctcgaccgtttcggagacgcgttcatcgacgacatcatatcacactga
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