Paraburkholderia dioscoreae: PDMSB3_0003
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Entry
PDMSB3_0003 CDS
T08115
Symbol
gyrB
Name
(GenBank) DNA gyrase, subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_0003 (gyrB)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_0003 (gyrB)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PDMSB3_0003 (gyrB)
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Topoisomerases
PDMSB3_0003 (gyrB)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PDMSB3_0003 (gyrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
VVD26465
UniProt:
A0A5Q4Z5J6
LinkDB
All DBs
Position
I:2468..4939
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AA seq
823 aa
AA seq
DB search
MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL
AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNS
YKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQV
TGETENRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKEEDFA
FVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRD
GGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSAQTK
DKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTRRKGV
LDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR
YDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ
MPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELLASEGATPITG
DALGELARAYLLAQAVVNRLSRLYDAGALEAVMDGIAIDLSSEEAADASAKALEAKLRDD
PLKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANTFKGLI
GTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRR
LLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacgaacaattcgcaacccgacaacagctacggcgcatcctcgattcagatc
ctcgaaggtctggaggcggtgcgcaagcggcccgggatgtacatcggggatacatcggac
gggaccggtctgcatcacctcgtattcgaagtgctggacaactccatcgacgaagcgttg
gcggggcattgcaacgacatccaggtgatcattcacgcggataactccatttccatcact
gacaacggccgcggcgtgccgaccggtctgaagatggacgacaagcatgatccgaagcgc
agcgccgctgaaatcgtgatgaccgagttgcacgccggcggcaagttcgaccagaacagc
tacaaggtgtccggcggcctgcacggcgtgggcgtgtcatgcgtgaatgcgctgtcggcg
tggctgcgtttgaccattcgccgcgacggcaagaagcacttcatggaattccaccgtggc
gtgccgcagaaccgcattatcgaagagatcgacggcgtggccgtttcgccgattcaggtc
accggcgagaccgagaaccgcggcaccgaagtgcactttctcgccgacgagacgattttc
ggcaacatcgaatatcactacgacattctggccaagcggattcgcgaactgtcgtttctg
aataacggcgtgcggattcgcttgacggatcagcgcaccggcaaggaagaagatttcgcg
ttcgtgggcggtgtgaagggctttgtcgagtacatcaacaagaacaagtccgtgctgcac
ccgaacattttccacatcagcggcgagaaagacggcgtgggcgtggaggtggcgatgcag
tggaacgacagctacaacgaaaacgtgctgtgcttcacgaacaacatcccgcagcgcgac
ggcggcacccacctgaccgggttgcgggcggcaatgacgcgcgtgttgaacaagtacatc
aacgatcacgaagtcgcgaagaaggcgaaggttgagacttctggcgacgatatgcgtgag
ggattgtcgtgtgtgctgtcggtgaaggtgccggagccgaagttcagcgcgcagacgaag
gacaagctggtgtcgtcggaagtgcgcgcgccggtggaggatgtggtcgcgaaggcgctc
gaagagtttctgctcgagacgccgaatgacgcgaagatcatttgcagcaagattgtggat
gcggcgcgcgcgcgggatgcggctcggaaggcgcgtgagatgacgcgtcggaagggtgtg
ctcgacggcgtgggtctgcctgggaagttggcggattgccaggagaaggatccggccaag
tctgagatttatatcgtcgagggtgactcggcgggcgggtcggcgaagcaggggcgggat
cggaagtttcaggcgattttgccgctgcgcggcaaggtgctgaatgtggagaaggcaagg
tatgacaagctgctttcttcggagcagattgtgacgctgattactgcgctgggctgtggg
attggtaaggaggactacaacctcgataagttgcgttatcaccgcatcattatcatgacc
gatgctgacgttgatggtgcgcacattcgtacgctattgttgacgttcttctatcggcag
atgccggagatgatcgagcgtgggtatatctatatcgcgcaaccgcccctgttcaaaatc
aaggctgggaaggatgagcggtatttgaaggatgaggctgaggttaatgctcacattctg
aaactggcgttgcaggggtcggagttgttggcttcggaaggggctacgccgattactggg
gatgcgttgggggagttggctcgggcttatttgctggcgcaggctgttgttaatcggttg
agccggttgtatgacgctggcgcgctcgaggctgtgatggatgggattgcgatcgatctg
tccagcgaggaagcggctgatgcgtcggctaaggctcttgaggcgaagctaagggatgat
ccgttgaagcctgaagttaaggttacgacgatgtatgaccctgtgcgtgaattgcgctcg
ctgcgggtcgcgcggacgcatcacgggaatcagaagatttctgtgttggatcaggatttt
caactcactgctgactatcagcagctgatcaataccgctaatacgtttaaggggttgatt
gggactggcgctgtcattaaacgtggcgagcggagtatggctgttactgacttcaagagc
gctatgaagtggttgttggctgatgctgagcgcaatatctcgaagcagcgctacaaaggc
ctcggcgagatgaatcctgggcagctttgggaaactacgatggatccgaccgtgcgtcgc
cttcttcgtgtgcagatcgaggatgctattgcggctgatgggatctttactacgctcatg
ggggatgatgtggagccgcgtagggctttcatcgagtcgaatgcattgcgggcggggaat
attgatgtttaa
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