Paraburkholderia dioscoreae: PDMSB3_0221.1
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Entry
PDMSB3_0221.1 CDS
T08115
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03030
DNA replication
pdio03410
Base excision repair
pdio03420
Nucleotide excision repair
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDMSB3_0221.1 (polA)
03410 Base excision repair
PDMSB3_0221.1 (polA)
03420 Nucleotide excision repair
PDMSB3_0221.1 (polA)
03440 Homologous recombination
PDMSB3_0221.1 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_0221.1 (polA)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_0221.1 (polA)
Enzymes [BR:
pdio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDMSB3_0221.1 (polA)
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PDMSB3_0221.1 (polA)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PDMSB3_0221.1 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDMSB3_0221.1 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
VVD31524
UniProt:
A0A5Q4Z2X0
LinkDB
All DBs
Position
II:232626..235367
Genome browser
AA seq
913 aa
AA seq
DB search
MPEERSLEGKTLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEY
SACVFDAKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDV
IGTLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERII
DYLSLVGDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLP
MAKKLVTVERNCDLTDHIVSIEESLQSQPESRAELREVFTRHGFKTWLREVEIADAVEGP
ETDVPPALSVDHERHYDTVQTWEQFDAWLETINAAELTSFDTETTSLDPMIAQIVGLSLS
VEAGRAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESVEHKKVGQHLKYDEQVLANYGIE
MRGIEHDTLLQSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAA
EYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQ
SSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQ
KLAEDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPN
LQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHR
ATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARY
PGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADL
IKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVADLKVPLV
AEVGAGLNWEEAH
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaacgaagccttgaaggtaagaccctgctattggtcgacggttcgagttat
ctgtaccgggcctaccatgcgatgcctgatctgcgcggccccgacggtggtccgacaggt
gcgctctacgggatgatcaacatgctgcggcgcatgcgcaaggaagtcacagcagagtat
agcgcgtgcgtgttcgacgccaagggcaaaacgttccgcgacgactggtatgccgactat
aaggcgaaccgtccgtccatgccggacgatctctcgcgtcagatcgagccgattcatgtg
gccgtgcgcgcgctcggctggccgctgctgatgatcgaaggcgtcgaggccgacgacgtg
atcggcacgctcagcaccgaggcggaaaaacgcggcatgaacgtgatcgtgtcgactggg
gacaaggatctggcgcagctcgtgtcggatcatgtcaccctcatcaatacgatgaccaac
gaaaaactcgaccgcgccggcgtgctcgccaagttcggcgtgccgccggagcgcatcatc
gactacctgtcgctggttggcgataccgtcgacaacgtgccgggcgtcgagaaatgcggg
ccgaaaaccgcggtcaaatggctgacgcaattcgactcgctggatggcatcgtcgcacat
gcggacgaaatcaaaggtgcggtaggagacaatctgcgccgtgcgctcgattttctgcca
atggcgaagaaactcgttaccgttgagcgcaattgcgacttgaccgaccatatcgtgtcg
atcgaggaaagcctgcaaagccagccggaatcgcgcgcggaactgcgcgaggtgttcacg
cgccacggcttcaagacatggctgcgcgaagtggaaatcgcggacgcggtggagggtcct
gaaaccgacgtgccgccggctttgtccgtggatcacgagcggcattacgacaccgtgcag
acgtgggaacaattcgacgcgtggttggagacgatcaacgcggccgaactcacttctttc
gataccgaaaccacgtcgctcgatcccatgatcgcgcagatcgtggggctgtcgttgtcg
gtcgaggccggccgtgcggcttatgtgccgctcgcgcatcgcggcccggacgcgcccgtg
caattgccgcgcgacgaagttctcgcgaggctcaagccgtggctggaaagcgtcgagcac
aagaaggtcggtcagcatctcaagtacgacgagcaggtgctggcgaactacggcatcgaa
atgcgcggtatcgaacacgacacgctgctgcagtcgtacgtggtcgaatcgcatcgcacg
cacgacatggacagcctcgcgctgcgccatctcggcgtgaagacgatcaagtacgaagag
gtggcgggcaagggcgcggggcagatcggtttcgacgaagtcgcgctggacaaggccgcg
gaatacgcagcggaagacgccgacatcaccttgcggctgcatcaggtgctgtacccgcaa
gtggcggcggagaagacgctccagtacgtttatcacgacatcgagctgcccacctcgcgc
gtgctgcggaaaatggaacgcaccggtgtgctgatcgattcggagaaactgcgtcagcaa
agcagcgaaatcgccacgcgtctgatccagttggaaagcgaggcgtatgtgctggccggc
ggcgaattcaatctgggctcgcccaagcagatcgggcagatcttcttcgagaagctggaa
ttgccggtggtcaagaagaccccgagcggcgcaccctccaccgacgaagaagtgctgcaa
aagctcgccgaagattttccgctgccgaagattctgctcgaacaccgtggcttgtcaaag
ctgaaatcgacctacacggacaagctgccgcgcatggtcaacgccaccacgggccgcgtg
cacacgaactatgcgcaggcggtggcggtcacggggcgcctcgcctcgaacgatccgaac
ctgcagaacattcccgtgcgcaccggcgaaggccgccgtattcgcgaagcgtttattgca
ccgcccggacacaagctggtctccgcggattattcgcagatcgaattgcgcatcatggcg
cacatttccggcgacgaatccttgctgcgctcgttctcgcaaggtgaagacattcaccgc
gccaccgcggcggaaatcttcagcgtgacgccgctcgaagtgtcgaacgaccaacggcgc
gtggccaaggtcatcaactttggtctgatctacggcatgagttcgttcgggctcgcttcg
aacctcggtatcacgcgcgacgccgccaagctctatatcgaccgctatttcgcacgttac
cctggcgtggcgcgttatatggacgaaacgcgcgtgagcgcgaaggccaagggttacgtc
gaaacggtattcggccgccgcctgtggctgcccgagatcaacggcggcaatggtccacgc
cgccaggccgccgagcgcgccgcgatcaacgcgccgatgcaaggcacggcggccgacctg
atcaagctctcgatgatcgcggtgcagaagtggatcgaagagtcgaagatcggcacgcgc
atgatcatgcaggtgcatgacgaattgattctcgaagtaccggacgcggaattgtccgac
gtgcgcaagcgcttgcccgagttgatgtgcggcgtcgccgacctgaaagtgccgctggtc
gccgaagtcggcgccggtctgaactgggaagaagcgcattga
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