Paraburkholderia dioscoreae: PDMSB3_0236.1
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Entry
PDMSB3_0236.1 CDS
T08115
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PDMSB3_0236.1 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdio03021
]
PDMSB3_0236.1 (rpoD)
Transcription machinery [BR:
pdio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PDMSB3_0236.1 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
GerE
UTP20_C
Motif
Other DBs
NCBI-ProteinID:
VVD31539
UniProt:
A0A5Q4ZA91
LinkDB
All DBs
Position
II:250588..252630
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AA seq
680 aa
AA seq
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MTKKLNEVPVDDDATQSEENPAAVPAKVEKAKARDRRAKEKALLKDAFASSQPGTVEELE
ERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDANAEDADGFSAQ
EAEAIESEDEEVEEDAEEDEEEDDGTAQATANAAQMEALKRASLEKFAMISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDK
CGMPRAEFIARFPGSETDLEWADKIVGEGHAYSAILTRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaacgaagtacccgtcgatgacgacgcaacccaaagcgaggaaaac
cctgcggctgttccagccaaggtggaaaaggccaaggctcgcgaccgtcgtgcaaaggaa
aaagcgctgctgaaagacgctttcgcgtcgtcgcagccgggcacggtcgaggaactcgag
gagcgccgctccaaactgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacg
tacgctgaaatcaacgaccacctgccggacaacttcaccgagaccgaggcgatcgaaggc
atcatcagcacgttcaacgacatgggcgtggcggtgtacgagcaggccccggacgctgag
acgctgctgctgaacgacaacgcgccggcggcttcttcggacgacgaagtggaagaggaa
gcggaagtcgcgctgtccaccgtcgactcggaattcggccgtaccaccgacccggtccgc
atgtacatgcgggaaatgggcacggtcgaactgctcacgcgcgaaggcgaaatcgaaatc
gcgaagcggatcgaagacggcctgaagcacatggtgatggccatctccgcatgcccgacc
acgatcgccgacattctggccatggccgagcgcgtcgcgaatgaggaaattcgcatcgac
gaactggtcgacggcctgatcgacgccaatgcggaagacgcggacggcttctccgcgcaa
gaggcggaagcgatcgagagcgaagacgaagaagtcgaagaggacgccgaagaagacgag
gaagaagacgacggcacggcgcaggccacggctaacgccgcgcagatggaagcgctcaag
cgtgcgtcgctcgaaaaattcgcgatgatcagcgaatggttcgacaagatgcgtcgcgcg
ttcgagaaggaaggctacaagtccaagtcgtatctgaaggcgcaggaaacgattcagaac
gagctcatgacgatccgctttactgcgcgtactgtcgagcgtttgtgcgacacgctgcgc
gcgcaggtggacgaagtgcgtcaggtcgagcgtcagattctgcacacggtagtcgacaag
tgcggcatgccgcgagcggaatttatcgcgcgtttcccgggcagcgaaacggatctcgag
tgggccgacaagatcgtcggtgaaggtcacgcgtatagcgcgatcctcacgcgtaacatt
ccggctatccgcgaacagcagcaacgtctgctggatctgcaggcgcgcgtcgtgctgccg
ctgaaagacctgaaggaaaccaaccgtcagatggcggcgggcgaactgaaggcgcgtcag
gcgaagcgcgaaatgaccgaggcgaacttgcgtctcgtgatctcgatcgcgaagaagtac
acaaaccgtggtctgcagttcctcgacctgattcaggaaggcaacatcggcctgatgaag
gcggtggacaagttcgaatatcgtcgcggctacaagttctccacgtacgcaacgtggtgg
atccgtcaggccattacgcgttcgatcgccgaccaggcgcgcacgatccggattccggtt
cacatgatcgaaacgatcaacaagatgaaccgcatctcgcgtcagatcttgcaggaaacc
ggtctcgagccggatccggcaacgctggccgagaagatggaaatgccggaagacaagatc
cgcaagatcatgaagatcgcgaaggaaccgatctccatggaaacgccgatcggtgacgac
gacgattcccacttgggcgacttcatcgaagacaacaacacggttgcgccggccgacgcc
gctttgcacgccagcatgcgcgatgtcgtgaaagacgtgctcgactcgctgacgccgcgc
gaagcgaaggtgctgcgcatgcgtttcggtatcgagatgagcaccgatcacacgctcgaa
gaggtcggcaagcagttcgacgtgacgcgcgaacggatccgtcagatcgaggcaaaggcg
ctgcgcaagctgcgtcacccgagccgttcggacaagctgaaatcgttcctcgaagggaat
tga
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