Paraburkholderia dioscoreae: PDMSB3_0261.2
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Entry
PDMSB3_0261.2 CDS
T08115
Symbol
clpC
Name
(GenBank) Negative regulator of genetic competence ClpC/MecB
KO
K03696
ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pdio03110
]
PDMSB3_0261.2 (clpC)
Chaperones and folding catalysts [BR:
pdio03110
]
Heat shock proteins
HSP100
PDMSB3_0261.2 (clpC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
Clp_N
AAA
ClpB_D2-small
AAA_5
AAA_16
AAA_22
Sigma54_activat
nSTAND3
AAA_7
AAA_28
bpMoxR
AAA_18
IstB_IS21
NACHT
AAA_25
ATPase_2
DUF815
AAA_14
AAA_23
Zeta_toxin
TniB
TIP49
AAA_3
ResIII
DNA_pol3_delta2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
VVD31097
UniProt:
A0A5Q4ZI63
LinkDB
All DBs
Position
pI:188629..191463
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AA seq
944 aa
AA seq
DB search
MAECSVCGKPATSQITITENGQRRQLMLCDEHYMEFMARNQRRLSPLESLFHGGLFESLF
DDMWPQTEGGRGSRSHIGRAPGQSAGADQGTGAGSGQMGDSADGHPGGRTRRHRRAREAV
DLQTYLSQSGLDRLQAAAQAAVEYGKNEVDTEHLLLALADNNVVQEILREFKLDPEEIRK
TIDQTAPRGTRKEPGDNEQIGVSPRAKSTLENALKSSLELGHSYVGPEHILIGLVEEEDG
FAGELLRKLGLSPQSLRQKAVKVVGKGAEDGKMEDRSTTPTLDKYARDLSALARQGKLDP
VIGRDKEIETTIEVLARRRKNNPVLIGEPGVGKTAIVEGLAQRIAQDQVPEVLRGKRVVE
LNINSVVAGAKYRGEFEERVKQVLDEIIENQDRLVVFIDELHTIVGAGQGGGEGGLDIGN
VFKPALARGELHLVGATTLNEYQKYIEKDSALERRFQPVMVPEPSVEETIEILRGLRDRL
EAHHKVKISEEAIAAAAKLSDRYIAARFLPDKAIDLLDQAAARVRISSNSRPQPLHDIEA
SIRRIKQEQDAASAAKQFDKAKELEERLVAEQKRLRESTETWKKDRGTSSQEVTAEDIAQ
IVSSLTGVPVSELTAEDREKLLRLEDRLKERVVGQDEAVSAVAKAVRLSRAGLTEAGKPT
ASFLFLGPTGVGKTELAKALAASVFGDENALVRIDMSEYSERHTVARLVGAPPGYVGYEE
GGQLTERVRRRPYCVVLLDEIEKAHSEVHNLLLQLFDEGRLTDGKGRLVDFTNTIIIATS
NVGSQLIQDNMKADSKQLDYPELRDRLMEILRHHFRPEFLNRVDEVVVFHALGKEQIRTI
VDLQLARVRRTALAQGIELSFDDALRDHLAQIGYDPEFGARMLKRKIRLEVESQLADALL
GGDVRDGDKVMMTYDSGTHSVRVLKGPTPTEAPSEASKEAPAHA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggccgagtgcagtgtttgtggaaagcccgcaacctcgcagatcacgatcaccgaaaac
ggccaacgccgtcagctgatgctatgcgatgagcactacatggagttcatggcgcgcaat
caacgccgcctgtcgccgctggagtccctctttcacggcggacttttcgaaagtctgttc
gacgacatgtggccacagacggaaggcggccgcggtagccggtcacacatcggacgcgcg
cccggacaatccgccggcgcggatcagggtacaggcgccggtagcgggcaaatgggcgat
tcagcggacggacacccaggtggccgcacacgccgacatcgccgggcgcgtgaagcggtg
gacctgcagacgtatctgagccagagcggtctggaccgcctgcaggccgcggcgcaagcg
gcggtcgaatatggcaagaacgaagtcgatacggaacacctgttgctagcgcttgccgat
aacaatgtggtgcaggaaatcctgcgtgaattcaagcttgatcccgaagagatcaggaaa
accatcgaccagaccgcgccacgcggcacccgcaaggaaccgggcgacaacgaacagatc
ggcgtgtcgccacgtgccaagagtacgctggaaaatgcgttgaagtcgtcgctggaacta
ggtcacagctatgtcggaccagagcacattctgattgggctcgtcgaggaagaagacggc
tttgccggtgaattgctgcgcaagctcgggctgtcgccgcaatcgctgcggcaaaaagca
gtcaaggtagtcggcaagggtgccgaagacggcaagatggaagaccgctccaccacgccc
acgctcgacaagtacgcgcgcgatctcagcgcgcttgcgcgtcaagggaagctcgatccg
gtgatcggccgtgacaaggaaatcgaaaccaccattgaagtgctcgcacggcgccgcaag
aacaatccggtgctaattggcgaacccggtgtgggcaagactgctatcgtcgaaggcctc
gcgcaacgcattgctcaggaccaggtgccggaagtgctgcgcggcaagcgcgtggtcgaa
ctgaatatcaatagcgtcgtggcgggtgcgaagtatcgtggcgaattcgaggaacgcgtc
aagcaggtgctggatgagatcatcgagaaccaggaccgtctggtggtgtttatcgacgaa
ctgcatacgattgtcggcgccggccagggcggcggcgaaggcggcctcgatatcggcaat
gtcttcaagccggcgctcgctcgcggtgagctgcacctcgtgggtgcgaccacgttgaac
gaataccagaagtacattgaaaaggactcggcattggagcggcgctttcagcccgtgatg
gtgcctgagcctagcgtcgaggaaacgatcgagattctgcgtggcctgcgtgaccggctt
gaggcgcatcacaaggtgaaaatcagtgaagaggcgatcgctgctgcggcaaagctctcg
gaccgctacatcgccgcgcgctttttgcccgataaggcaatcgatttgctcgatcaggcc
gccgcccgcgtgcgcatttcatccaattcgcgtccgcagccattgcacgatatcgaggcg
agcatccgccgcatcaagcaggaacaggacgcggccagcgctgcaaagcagttcgataaa
gccaaggaactggaagaacggctcgtcgcggaacaaaaacgcctgcgtgaatccactgaa
acgtggaagaaggaccgcggcaccagctcgcaggaagtgacggcggaagacattgcgcag
atcgtttcgtcgctcacgggcgtaccggtatctgaactgactgccgaggaccgcgaaaag
ctgttgcgactggaagaccgcctgaaggagcgcgtggtcggccaggatgaagccgtctcc
gcggtcgccaaagcggtgcggctttcgcgcgccggtttgacggaggccggcaagccgacc
gcgagtttcctctttcttggacctacgggtgtggggaaaaccgaactcgcgaaggcgctt
gccgcttcggtgttcggcgacgagaacgcgctggtacgcattgacatgagcgagtattcc
gagcgtcatacggtggcacggctggttggcgcgccacccggatatgtcggctacgaggaa
ggcgggcaactcaccgagcgcgtgcggcgcaggccatattgcgtggtgctgctcgacgaa
atcgaaaaggcgcactcggaggtgcacaacctcctgctgcaactgttcgacgaagggcgg
ctcaccgacggcaagggacgtctggtcgatttcaccaacacgatcatcatcgcgaccagc
aacgtcggctcacagctgatccaggacaacatgaaggctgactcgaagcaactcgattat
cctgagctgcgggaccggttgatggagatcctgcgacatcatttcaggccggagtttctc
aatcgcgtcgacgaggtggtcgtgtttcatgcgctcggcaaggagcagattcgcaccatc
gtcgatctgcaacttgcgcgcgtacggcgtacggcgctggcccagggcatcgagctgtcg
ttcgacgatgcgttgcgcgatcaccttgcgcagatcggctatgaccccgagttcggcgcg
cgaatgctcaaacgcaagatccgtcttgaagtggaatcgcaactcgccgatgccctgttg
ggaggcgacgtgcgcgacggcgacaaggtcatgatgacctacgactccggtacgcactcc
gtgcgtgtgctgaaaggaccaacgcccacagaagcgcccagcgaggcgtctaaggaggcg
ccggcgcatgcgtga
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