Paraburkholderia dioscoreae: PDMSB3_0468
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Entry
PDMSB3_0468 CDS
T08115
Name
(GenBank) PAS domain S-box
Organism
pdio
Paraburkholderia dioscoreae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c
SBP_bac_3
Response_reg
HisKA
PAS_4
Phosphonate-bd
PAS
PAS_9
Hpt
PAS_8
Motif
Other DBs
NCBI-ProteinID:
VVD26930
UniProt:
A0A5Q4YUD8
LinkDB
All DBs
Position
I:468177..472670
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AA seq
1497 aa
AA seq
DB search
MLPGVIVMSSVNLPPGVAMRRALERVRLCLLAWFLFAAAQTATAVQLFDNRSNSQAVAAF
PAKLTVGILAGGWMPLDALQDGRLTGMSVDYLRALVGPNVVIEARAFPDVSQLLAAACAG
NVDLLTSVARTPERERCLSFTAPYFRSSSSAVVRRDGDSYASPALVAGARIAVEKGFALE
RVVRERFPHAQISAFATTHAALSAVVRGDADVYLGFTPAVQYALATEEFRGLHVAFEESS
RAANLRFAVPRGHAALRDQLDEALASMNPADDAAIRVRWLSGNFDAKPVPTAPRLVLTPQ
EQAWLRSLPPLQIGFDNGWSPFSYVDSSGRPAGIAADYLAYLSRTLGVVFNRARTADWPA
AIEAFQRGELAILATASIHDPRLKGARHTVAYESYPLVIVGREDEPAARSLSDFASRRVV
VSSHVAGSIPLAFERIPADHIVVAPSLDDAFEMVAAGEADVLVGNVAAIDVLLKQRYDGV
LKILGTVGESDALDFAVRADLMPLAGLIDRALLAMPPAEKQRIRQKWVTGSAPESGIWSV
TAVRLLPLLIGIGVALLITLRAYLLLQREVRLRKKTELELELQLNFQETMMKMVPYPLVA
MDLDGRYIAVNEAYEQACGMSREAVIGRNTMDVQTWGEANSRILTDMTREMLNGRETAQL
ELQFERGAGNVRHGLFWASVCRGSDGQPVCVLGTVVDITDIRRAEMRARETERRLFDVTR
SLPAVVFQLRRTSDGAYSFPYIGGDTRHLLGGKDGSLSSSDHVDFQRVCEEDRAFVLAEL
ERSALCETPVNMEFRFEGDQEIKWARAELVPRREPDGSVVWSGYWVDASVEHARSDELAR
ARDLAEAAARAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNTDQGEMLGMIHESAGAL
LQILDDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAAA
LRGDSVRLRQILFNLLGNAIKFTPQGEVDVRVSVFAEADDVQTLEMTVEDTGIGIAPEVQ
NRLFEPFVQAESSTTRRFGGTGLGLTICRKLIDLMGGSLALHSEPGRGTRMIVQLSMAVE
TQRYSVNGLRGKRGLVATGDARIAQALMHFGEALGLTLRRVSPDAPELRDRVALADLDLL
FVNEDVTLPAGVRPRTRVICLTEKPKPTGYRILDDNVRVSINPISWRGLGAACAAAMTGL
PSVPRSAATPRAPEGGAPPPDRERAIASGRLILVAEDHPVNQELIRHQLALLGFACDVTN
DGAEALAALQRTSYGCLITDCHMPNVSGYELTRRIREGEEGGAHRLPILGITANTAPEDL
NLCRDAGMDDSLVKPTRLATLRDYLSRWFGSDSAGHAAPSEVAGAPVLATPDVQGGADPF
VPVDLGHMTQLWGSESTVKALLDSFVSSVREDVQSLSPLLERVGSERTELERVREWLHRV
AGAASVLQYPPLLMALEDYRREINVKPPERVRNDGIVLINKCNAMLDGIEQQAALLV
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
gtgttgccgggtgtcattgtcatgtcttccgtcaatttgccgccgggcgttgcgatgagg
cgcgcgcttgaacgcgtgcggctctgtctgctcgcatggttcctgtttgccgccgcccag
acggcaacggcagtccaacttttcgacaatcgttcgaacagccaggctgttgcggctttt
cccgcgaaactgactgtcggcattctcgccggcggctggatgccgctcgacgcactgcaa
gacggccgtctcaccggtatgagtgtcgactatttgcgcgcactcgtcgggccgaatgtc
gtcatcgaagccagggcgtttccagacgtgtcgcaattgctcgccgccgcatgcgccgga
aacgtcgatctgttgacgagcgttgcgcgcacaccggagcgtgagcggtgcctgagtttt
accgcaccgtatttccgctcttcgtcgtcggccgtagttcgccgggacggcgacagttac
gcgagtcccgctctggtcgccggagctcgcattgcggtagaaaagggctttgcgctcgag
cgcgtggtacgcgagcgttttccgcatgcacagatcagcgcgttcgccacgacgcacgcg
gcactctccgccgtggtccgaggcgacgccgacgtctatctcggcttcaccccggctgtg
caatacgcgttggccaccgaggagtttcgcggcctgcacgtcgccttcgaagagagcagc
cgggccgccaacctgcgctttgcggtgccacgcggtcacgccgcattgcgggaccagctc
gacgaggcgctcgcgtcgatgaacccggccgacgacgcggcgattcgtgtgcgctggcta
tccggcaacttcgacgcgaagcccgtgcccaccgcgccgcgtctcgtgctgacgccgcaa
gagcaggcctggctgcgttcattgccgccgttgcagatcggtttcgacaacggctggtcg
ccgttcagctacgtcgacagctccggtcggcctgccggcattgccgccgactatctggcg
tatctgagccgcacactcggcgtcgtattcaaccgcgcccgcacggccgactggcccgcc
gctatcgaagcatttcagcgcggcgaactggccattctcgccacggcatcgattcacgat
ccacgactcaagggggcgcggcataccgtcgcctacgaaagctatccgctggtgatcgtc
gggcgtgaggacgagccggcggccagatcgctgagcgatttcgcgtcacgccgcgtcgtc
gtttcttcgcacgtcgccggttcgattccgctcgcgttcgaacgaattccggcagaccac
attgttgtcgcgcccagtctcgatgacgcgttcgagatggtcgcggccggcgaggcggac
gttctggtgggcaacgtggccgctatcgacgttctgctcaagcaacggtacgacggcgtc
ctgaaaatcctcggcacggttggcgaatccgacgcgctcgactttgccgtgcgcgcggac
ctgatgccgcttgccgggctgatcgaccgcgcgttgctggccatgccgcccgcggaaaag
cagcgcatccggcagaagtgggtcaccggcagtgcgccggagtccggcatatggagcgtt
accgcggtgcgtctgctgcctttgcttatcggtatcggcgtcgcgctgctgatcaccctg
cgtgcctatctgctgctgcaacgggaagtcagactgcgcaagaaaaccgaactcgaactc
gaattgcaactgaatttccaggaaaccatgatgaagatggtgccgtatccgcttgtcgcc
atggacctcgacggccgctatatcgccgtcaacgaggcctatgagcaagcctgcggaatg
agtcgcgaggcggtgatcggacgaaacaccatggacgttcagacatggggcgaggccaac
agccggatcctgaccgacatgactcgcgagatgctgaacggccgggagaccgcgcaactg
gagttgcagttcgagcgcggtgcgggcaacgtgcggcatggccttttctgggccagtgtc
tgccgcggcagcgacggtcaaccggtgtgcgtgctcggcacagtggtcgatatcacggat
atccggcgcgccgagatgcgcgcgcgcgaaaccgaacggcgcctcttcgacgtgacgcgc
tcgctgccggcggtggtgtttcaactgcgccgcacttcggacggcgcgtattcgtttccg
tatatcggcggtgatacgcgccatctgctcggcgggaaagacggctcgttgagcagcagc
gaccacgtcgatttccagcgcgtgtgcgaggaagacagggcgttcgtgctggcggagctc
gaacgctcggctctttgcgagacaccggtgaacatggagttccgtttcgaaggcgaccag
gagatcaagtgggcgcgcgcggaactggtgccgcgtcgggaaccggatggcagcgtcgtt
tggagcggctactgggtggacgccagcgttgagcacgcccgctccgacgagcttgcgcga
gcccgcgacctcgctgaggccgcagcgcgtgccaaagacgacttcttcgcgatgatgagc
catgaaatccgcacgccgatgaacggagtgctcggtctcgtggaggtgctggagcgcacg
ccgctcaacacggaccagggtgaaatgctcggcatgatccacgaatcggcgggcgctttg
ctgcagatcctcgacgacttgctcgactattcgaaaatcgaagcgggtcggttgacgatc
gaggccgaatccatcgacatacgtgagctggtggacaacgctgttggcctgctggctggc
cgggcccacgagaagggtctgaaagtgcgcgtggatattgcgccggatgttgcagccgcc
ctgcggggcgatagcgtccggttgcggcagattctcttcaatctgcttggcaatgccatc
aagtttacgccgcaaggcgaggtcgacgtgcgcgtgtcggtgttcgcagaggccgatgac
gtccagacgctcgaaatgactgtcgaggacaccggcatcggtatcgcgccggaggtgcag
aacaggctgttcgagccgttcgtgcaggcggagtcgtccaccacgcgccggttcggcggt
acgggccttggcttgacgatctgccgcaaactgatcgacctcatgggcggttcgctggcg
ttgcacagcgaaccgggccgcggcacgcgcatgatcgtgcaactgagcatggctgtcgag
actcagcgttattctgtcaacggtttgcgtggcaagcgcgggctcgtggcaaccggcgac
gcacgcattgctcaggctctgatgcacttcggcgaggcgcttggactcacgttgcgccgc
gtgtcgcccgacgcgcccgaactgcgcgatcgcgtcgcgttggcggatctggatttgctg
ttcgtgaacgaggacgtgacgttacctgcgggcgtgcgcccgcgcacacgcgttatctgc
ctgaccgagaagccgaagccgacgggctaccgcattctcgacgacaacgtgcgcgtcagc
atcaaccccatttcatggcgcggcctcggtgccgcgtgcgccgccgcgatgacagggctg
ccttcggtgccgcgctcggcggccacgccacgtgcgcccgagggcggcgctccgccgccg
gaccgcgagcgggcaatcgcgagtggccggctgatccttgtggcggaagatcatccggtc
aatcaggagttgatccggcaccagctcgcgttgctgggtttcgcctgcgacgtgacgaac
gacggagcggaagcgctggctgcattgcagcgcacgagctacggttgtctgatcacggac
tgtcacatgccgaacgtgtcgggctatgaactcacgcggcgtatccgtgaaggtgaagag
gggggcgcgcatcggctacccattctgggtatcacggcgaataccgcacccgaagacctg
aatctgtgtcgcgacgccggcatggacgacagcctcgtgaaaccaacccggctggccacg
ctgcgcgactatctgagccgttggttcggctccgacagcgcggggcacgccgcgccttcg
gaggtcgccggagcgccggtgcttgccacaccggatgttcaaggtggcgccgacccgttc
gtcccggtcgacctggggcacatgactcaactgtggggtagtgaatcgaccgtcaaggcg
ttgctcgactcgtttgtgtcgtcggtgcgcgaagacgtgcagtccttgtcgccgttgctc
gagcgcgtcggctccgagcgcacggaactggagcgcgtgcgcgagtggcttcatcgcgtg
gcgggggcggcgagcgtcctgcaatatccgccgctgctcatggcgcttgaagattaccgt
cgcgaaatcaatgtcaagccgccggaacgtgtgcgcaatgacgggatagttttaatcaac
aagtgcaacgccatgctggacggaatcgaacagcaggccgcattgctcgtataa
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