Paraburkholderia dioscoreae: PDMSB3_0505
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Entry
PDMSB3_0505 CDS
T08115
Name
(GenBank) PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
Organism
pdio
Paraburkholderia dioscoreae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_4
PAS_9
PAS
PAS_8
PAS_3
Motif
Other DBs
NCBI-ProteinID:
VVD26967
UniProt:
A0A5Q4Z5R5
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All DBs
Position
I:512508..515618
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AA seq
1036 aa
AA seq
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MTPFLSKRLLINIAVVAAAVGANAFVAYTQICGQRDADARMLRSTSVRQNLDAYQSALDG
GLAALGRFETSGESAPAGAATGMAATLTRLERDLRSELAGEPAMLDALAKLSADSHALQH
DIDHALLRSADSGASASRAWAASTYTHLGLGLDRVEAALAALRGEENRALRASLAASASE
TQRAMFLLIVTMLAGSVLLIYTFGARENSAREKLRTVRALGRNDERFRGLFDDHPVPMYI
VDRETLRFLAVNAAAIQQYGYSESEFLGMTVRAIRPKAEIPRLESHLQRSDATHHGRTMA
GIWHHRRKDGSTISADISYHALNFMGRAAFFVLADDVTDQINAEAEAQRSNQMLEAVIDN
IPQRIFWKDLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRDFSSLLNDHDREVVST
GVPKMNFEVDLMIDGVHRTTVTSKLPFTDGEGRVIGVLGSYTDITERKRADLALRLQSRA
LDASVNAILITAPSPAGNLIEYVNPAFMRITGYDAAEAIGHDCRLLQRDDRDQEGVALIR
QALAANREVSAVVRNYRKDGALFWNQLFIAPVPNQDGVITHHIGVINDVTDLMRYQEQLE
YQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKGVAVVFIDLDGFKNVNDSLGHSVGDRL
LSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRVSISEPVWLDGTE
LYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNASAGTRLNLER
RLRRALRDNQFLLHYQPQVDIVSGQIVGTEALVRWRDPEVGLVPPSSFIPVAEESGLIGP
LSEWVLREACRQNKAWQDEGLPPARVSVNLSARVFQQRDIAKLVMQVLDETGLEPQYLEL
ELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDRLKIDRSFVSD
IGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGFYFAKPLSTDA
ISELLQGGVGRELATV
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgactccttttctatcgaagcggctgctgatcaatatagcggtcgtcgccgcggcggtc
ggcgcgaacgcgttcgtcgcctacacgcagatttgcggccaacgcgatgccgacgcgcgc
atgctgcggtccacgagcgtgcgccagaacctcgacgcctaccagtcggcgctcgacggc
ggccttgccgcgctcggccgcttcgagacgtcgggcgagtccgcgccggccggcgctgcg
accggcatggccgcgacgctcacgcgtctggagcgcgacctgcgcagtgaacttgccggc
gaacccgccatgctcgacgcgctcgccaagctgagtgcggacagccatgcgttgcaacac
gacatcgaccacgcgctgctaaggagcgccgactccggcgcgagcgcctcgcgcgcatgg
gcggcctcgacctacacccatctcgggctcggcctggatcgcgtcgaagccgcgctggcc
gcgctgcgcggcgaggagaaccgcgccttgcgggcctcgctcgcggcgtcggcgagcgaa
acccagcgggcgatgttcctgctgatcgtgacgatgctggccggcagcgtgctgctgatc
tacacgttcggcgcccgtgaaaacagcgcgcgcgagaagctgcgcaccgtccgcgcgctc
ggccgcaacgacgaacgttttcgcggcctgttcgacgatcatccggtgccgatgtatatc
gtcgatcgcgagacgctgcgctttctagccgtcaacgcggcggcgatccagcaatacggc
tattccgaaagcgaatttctcggcatgacggttcgcgcgatccggccgaaagccgaaatc
ccgcgtctcgaatcgcatctgcagcgcagcgacgcgacccaccacggccgaacgatggcg
ggtatctggcatcatcggcgcaaggacggctcgacgatcagtgccgacatttcgtatcac
gcgctgaacttcatgggccgcgccgcgtttttcgtgctggccgacgacgtcaccgaccag
atcaacgcggaagccgaagcgcagcgttcgaaccagatgctcgaagcggtgatcgacaat
attccgcagcgcattttctggaaggatctggagtcgcgctacctcggctgcaacatggcg
ttcgcgcgcgatgcgggactcgcgtatcccgagcaggtggtgggcaagagcgacgccgac
atgccgtggcgcgacttctccagtctgctgaacgaccacgacagggaagtagtgagcacc
ggcgtgccgaagatgaatttcgaagtcgatctgatgatcgacggcgtgcaccgcaccacg
gtcacgagcaagctgccgttcaccgacggcgagggccgcgtgatcggcgtgctcggttcg
tacacggatatcaccgagcgcaagcgcgccgaccttgccttgcgcctgcaaagccgtgcg
ctcgatgcgagcgtcaacgcgattctgatcaccgcgccgtcgccggccggcaacctgatc
gagtacgtgaacccggcgttcatgcgcattaccggctacgacgcagccgaggcgatcggc
cacgattgccgcctgctgcagcgcgacgaccgcgaccaggaaggcgtcgcgctgatccgc
caggcgctcgcggcgaaccgtgaagtgagcgcggtggtgcgcaactatcgcaaggacggc
gcgttgttctggaatcagctcttcatcgcgccggtgccgaatcaggacggcgtgatcact
caccacatcggcgtgatcaacgacgtgaccgatctgatgcgctatcaggaacagctggaa
tatcaggccaactacgacagcctgacgcgtctgccgaaccgcaatctgctgcgcgaccgt
ctgcagcacgcgttgatcgtcgcgcaacggcagcacaagggcgtcgcggtcgtgttcatc
gatctggacggtttcaagaacgtcaacgacagcctcggccacagcgtgggcgaccggctg
ctgagcgtggttgccgagcgcctggcacgttgcacgcgcacgagcgatacggtggcgcgg
catggcggcgacgagttcgtgatcgtgatgaccgataccgtcgacgaacagtcgttgatc
gcgtggatggagcgcgtgcgcgtgtcgatctccgaaccggtctggctcgacggcaccgag
ctgtacgtcggctgcagcatgggcgcgagcctcttcccgcaagacggcgaagatgccgaa
acgctgatgaagaaggccgatctcgcgatgtaccgcgccaaggacatgggccgcaatacg
ttccagttctatcagccggaaatgaatgcgagcgcgggcacgcgtctgaatctcgagcgg
cgcttgcgccgcgcgctgcgcgacaaccagttcctgctgcactaccagccgcaggtggat
attgtgagcggacagatcgtcggcaccgaagcgctggtgcgctggcgcgatccggaagtc
ggactggtgccgccgtcgtcgttcattccggtcgcggaagaaagcgggctgatcgggcca
ctctcggagtgggtgctgcgcgaggcgtgccgccagaacaaggcctggcaggatgaaggc
ttgccgccggcgcgcgtctcggtgaatctgtcggcgcgcgtgttccagcagcgcgatatc
gccaagctggtcatgcaggtgctggacgagaccggcctcgagccgcaataccttgaactc
gaactgaccgaaagcaccatcatgcgcaacgccgaagaagccgtgtcgatgctcaacgaa
ctgcacgcgctcggcatcggccttgccatcgacgacttcggcaccggctattcaagtctc
agctatctgaagcgcttcccggtggaccgcctgaagatcgaccgctcgttcgtctccgac
atcggcgtatcgggcgacgacgaaacgatcacctcggcgattatcgcgctcgcgcactcg
ctgaaattgcaggtgatcgccgaaggcgtggagacgtccgcgcagctcgacttcctgaaa
gagcgcgcctgcgacgagatgcagggcttctacttcgcgaagccgttgtcgacggacgcg
atttccgaactgctgcagggcggcgtggggcgcgaactggcaacggtgtga
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