Paraburkholderia dioscoreae: PDMSB3_0785
Help
Entry
PDMSB3_0785 CDS
T08115
Symbol
rmlB
Name
(GenBank) dTDP-D-glucose-4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00521
Streptomycin biosynthesis
pdio00523
Polyketide sugar unit biosynthesis
pdio00525
Acarbose and validamycin biosynthesis
pdio00541
Biosynthesis of various nucleotide sugars
pdio01100
Metabolic pathways
pdio01110
Biosynthesis of secondary metabolites
pdio01250
Biosynthesis of nucleotide sugars
Module
pdio_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PDMSB3_0785 (rmlB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PDMSB3_0785 (rmlB)
01055 Biosynthesis of vancomycin group antibiotics
PDMSB3_0785 (rmlB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PDMSB3_0785 (rmlB)
00525 Acarbose and validamycin biosynthesis
PDMSB3_0785 (rmlB)
Enzymes [BR:
pdio01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PDMSB3_0785 (rmlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
VVD27247
UniProt:
A0A5Q4Z5V3
LinkDB
All DBs
Position
I:815233..816294
Genome browser
AA seq
353 aa
AA seq
DB search
MIFVTGGAGFIGANFVLDWLEISDEPVVNVDKLTYAGNLHTLKSLQRNPMHTFVCADICD
RTAMDELFAEYKPRAVLHLAAETHVDRSIHGPEKFVQTNVVGTFTLLEAARSYWSRLNDA
DKAEFRFLHVSTDEVFGSLSSTDPQFSETTPYAPNSPYSATKAGSDHLVRAYHHTYGLPV
LTTNCSNNYGPYQFPEKLIPLMIASALAGKPLPVYGDGQNVRDWLYVGDHCSAIREVLAR
GTPGETYNVGGWNEKKNLEVVHTLCDLLDQLRPKAGASYHDQITYVKDRPGHDRRYAIDA
RKLERELGWKPAETFETGLAKTVRWYLDNQAWSDEVASGEYRKWVETNYAQRA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgtgacaggcggggccggttttatcggcgccaacttcgtgctcgactggctg
gaaatcagcgacgagcctgtagtgaatgtcgacaagctcacctatgccggaaatctgcac
acgctgaaatctctgcagcgcaatccgatgcatacgtttgtctgcgccgacatatgcgac
cgcactgcaatggacgagttgttcgccgaatacaaaccgcgcgcggttctccacctggcg
gcggagactcatgtcgaccggtcaattcacgggccggagaaattcgtgcagaccaatgtc
gtgggtaccttcacgctactggaagcggcacgctcgtattggagcaggttgaacgatgct
gataaagcggaattccgcttcctgcacgtctcgaccgacgaagtattcggctcgctgtcc
tctaccgacccgcagttctccgaaaccacgccttatgcgccgaacagtccttactcggcc
accaaggcgggttccgaccacctcgtgcgcgcttaccatcatacgtatgggctgccggtg
ctgaccacgaactgctcgaacaactacggtccgtaccagttccccgaaaaactgatcccg
ctgatgatcgccagcgcgctcgccggcaagccgctgccggtctacggcgacggccagaac
gtgcgcgactggctgtacgtgggtgaccactgcagcgcgatccgcgaagtgctcgcgcgc
ggcacgccgggcgagacgtacaacgtgggcggctggaacgagaagaagaacctcgaagtg
gtccacacgctgtgcgacctgctcgaccagttgcgtccgaaggcgggcgcgtcgtaccac
gaccagatcacgtatgtgaaggatcgtccgggccacgaccgccgctatgcgatcgacgcg
cgcaagctcgaacgtgagcttggatggaagcctgcggaaacgttcgaaacgggtctggcg
aagacggtccggtggtatctggacaatcaggcgtggtcggacgaagtcgcctcgggcgag
taccgcaagtgggttgagaccaactacgcgcagcgcgcgtaa
DBGET
integrated database retrieval system