Paraburkholderia dioscoreae: PDMSB3_0883
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Entry
PDMSB3_0883 CDS
T08115
Symbol
cobD
Name
(GenBank) Cobalamin biosynthesis protein CobD
KO
K02227
adenosylcobinamide-phosphate synthase [EC:
6.3.1.10
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00860
Porphyrin metabolism
pdio01100
Metabolic pathways
pdio01240
Biosynthesis of cofactors
Module
pdio_M00122
Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
PDMSB3_0883 (cobD)
Enzymes [BR:
pdio01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.10 adenosylcobinamide-phosphate synthase
PDMSB3_0883 (cobD)
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Ortholog
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Gene cluster
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Motif
Pfam:
CobD_Cbib
AmpE
RDD
Motif
Other DBs
NCBI-ProteinID:
VVD27345
UniProt:
A0A5Q4ZB08
LinkDB
All DBs
Position
I:complement(917412..918347)
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AA seq
311 aa
AA seq
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MLSLPLLVTLTTVGVALDRWFGEPRTAHPLVGFGKWAMRLETRYNTGRRLRLKGLLAWSL
AVMPPVLIAWCLVAVLPFFAACAVHVALLWFALGARSLHDHIAPIAQALAQRDLPQARLL
TARIVSRETAHADEGALSRAAVESALENGNDAIFGALFWFAIAGGPGALGFRLANTLDAM
WGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAADVNAALMLVERTVVLWLAALI
VLALLSVPFHV
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgctcccgcttctcgtgacgctgaccaccgtgggcgtcgccctcgaccgttgg
tttggcgagccgcgcacggctcatccgctggtagggttcggcaaatgggcgatgcgtctc
gaaacgcgctacaacaccggccgccgcttgcggctcaaagggctgctcgcgtggtcgctg
gccgtgatgccgcccgtgctgatcgcctggtgcctggttgccgtgctgccgtttttcgcg
gcctgcgcggtgcatgtcgcgctgctgtggttcgcgctcggcgcgcgcagtctgcacgat
cacattgcgccgatcgcgcaggcattggcgcagcgcgatctcccgcaagcgcgcttgctg
accgcgcgcatcgtctcgcgcgaaaccgcgcatgcggacgaaggtgcgctgtcgcgcgcc
gccgtcgaatcggcgctcgaaaacggcaacgatgcgatcttcggcgcgctgttctggttt
gccatcgcgggcggtccgggtgcgctggggtttcgtctcgccaacacgctcgacgcgatg
tggggttatcgcacgccgcgctatttgcgctacggctgggccgccgcgcggatcgacgac
gtgctcaactggattcccgcccgtctgacagccgccagctatgcgctcctcggcgacacg
cgcaccgcgtggcgctgctggcgcgaacaggcgccgcgctgggacagcccgaacgccgga
ccggtgatggcagccggcgcaggcagtctgaacgtgctgatcggcggcccggcggtttat
cacggcgcactcgaacatcgcccgatgctcggcttcggacgcgaggccaaggccgccgac
gtcaacgccgcgttgatgctggtcgagcgcacggtcgttctatggctcgccgcgctgatc
gtgctggcgttgctgagcgtgccctttcatgtttga
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