Paraburkholderia dioscoreae: PDMSB3_1233
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Entry
PDMSB3_1233 CDS
T08115
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03030
DNA replication
pdio03430
Mismatch repair
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDMSB3_1233 (dnaE)
03430 Mismatch repair
PDMSB3_1233 (dnaE)
03440 Homologous recombination
PDMSB3_1233 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_1233 (dnaE)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1233 (dnaE)
Enzymes [BR:
pdio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDMSB3_1233 (dnaE)
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PDMSB3_1233 (dnaE)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PDMSB3_1233 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
HROB
Motif
Other DBs
NCBI-ProteinID:
VVD27695
UniProt:
A0A5Q4ZBM9
LinkDB
All DBs
Position
I:1261075..1264656
Genome browser
AA seq
1193 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDREKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIE
AGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQRCGQP
GGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTP
EQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL
SKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAE
HRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEADGKRSRTIRYGLG
AIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDSPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYRDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKV
QMNGNADALALRRVLEAHSAGKDEPQAAAAPAASSRGGNGGGNGGGRNGGGYGGGGQRQA
VQIPNGLAVQVVYRSQNAEGEMRLGDAWRVKPTDELLAALRGEFAGSSIEIVY
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatcctcgcttcgttcatctccgcgttcactccgaattctcgatt
gccgatggcatcgtgcgccttgacgacgtcgtcaaggccgctgccaaagacggccagggc
gcgctcgccctcaccgatctcggcaacgcattcggcctagtccgtttctacaaggaagcc
cgcggcaaaggggtcaagcccattgccggctgcgacgtctggatcaccaatccggacgac
cgcgaaaagccttcccgtttgctgctgctcgtcaaagaccggcgcggctacctgaatctg
tgcgaactgctcagcaaggcgtcgctcacgaatcagtatcgcggtcgcgcggaaatcgag
gccggctggctcgaatccggtctgggcgaagggctgctcgcattgtccggcgcgcagcag
ggcgacgtgggtctcgcgctcgcggcgggtaacgaagaagcggcaaaacgcaatgcgttg
cactgggcgaaggtgttcccgggcggcttttatatcgaggtgcagcgctgcgggcagccg
ggcggcgagcactacgtgcagcaggcggtcgcgcttgcggcgtcgctgaaattaccggtg
gtcgccacgcatcccatgcagttcatgacgccggacgacttcaccgcgcacgaagcgcgc
gtgtgtatttccgaaggcgacattctggccaatccgcgccgctcgaagcgctttacgccc
gagcagtacttccgcacgcaggaagaaatggccgcgctgttcgcggacattccgtcggcg
ctcgccaactcggtcgaaatcgccaagcgctgcaacctcacgttggaactcggcaagccc
aagctgccgctgttcccgacacccgacggcatgtcgctcgacgactaccttgtccatctg
tcgaaagaaggcctcgaaaagcgtctcgaacagttgtatccggacgcggccgagcgcgaa
gcgcagcgcgaaacgtattaccagcgcctcgaattcgagtgcggcacgatcatcaagatg
ggctttcccggctacttcctgatcgtggcggacttcatcaactgggcgaagaacaacggc
gtgccggtcggtccgggccgcggctcgggcgcgggttcgctggtcgcgtacgcgctcggc
gtgaccgacctcgatccgctgcgctacaacctgctgttcgaacgtttcctgaatccggag
cgggtgtccatgcccgacttcgacatcgacttctgccagcacggccgtgatcgcgtgatc
cagtacgtgaaggaaaagtacggcgcggacgcggtgtcgcagatcgccacgttcggcacg
atggcggcgaaggcggcggtgcgcgacatcggccgggtgctcgatctcggctacatgttc
acggacggcatcgccaagctgattccgttcaagccgggcaagcacgtcaccattgcggac
gcgatgaaggaagagccgctgctgcaggagcgcttcgacaacgaagacgaagtgcatcag
ttgctcgaactcgcgcagcgcgtggaagggctgacgcggaacgtcggcatgcacgcgggc
ggtgtgctgatcgcgccgggcaagctgaccgatttctgcccgctgtacacgcagggcgac
gaaagcggcgtcgtgagtcagtacgacaaggacgacgtcgaagccgtcggcctcgtgaag
ttcgactttttgggtctgaccacgctcacgattctcgactgggccgagcgctatatccgg
cgcctggatccgtcgaagcaggactggtcgctcgcgcaggtgccgctcgacgacccggcg
tcgttctcgatcctgaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcaaggcatgctgaaagacgcgcagcctgaccgcttcgaggacatcatcgcgctggtc
gcgttgtaccgtccgggcccaatggacctgattccgagcttctgcgcgcgtaagcacggc
cgcgaagtggtcgagtatccggatccgcgtgtcgaatctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtcatgcagatggcgcagatcatcggcggctattcgctg
ggcggcgccgacttgctgcgtcgcgcgatgggtaagaagaaggccgaggaaatggccgag
catcgcgagctgttccgtcagggcgccgcgaagaacgggctggctggcgagaaggccgac
gaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcc
gcgtatgcgctactcgcgtactacacggcatggctgaaggcgcaccatccggcggaattc
atggcggcgaatatgtcgctcgccatggacgacacggacaaggtcaagatcctgttcgaa
gactgcctcgtgaacaagatggcggtgctgccgccggacgtcaatctgtccgcgtaccgc
ttcgagccggttgcggaagccgacggcaagcgttcgcgaacgatccgctatggcctcggt
gcaatcaagggcagcggccagaacgcgatcgaagaaatcctgcgcgcgcgtgaggaaggc
ccgtttatcgacatcttcgatttctgtaaccgggtcgatcgccgtatcgtcaatcgccgt
acggtcgaagccttgatccgcgccggcgctttcgacacgttgcatgcgaatcgcgcgcaa
ctgatcgcttcggtctcacttgcgatggaagccgccgaacaggcgagcgccaacgcgctg
caagcgggcctgttcgacatgggcgactcaccctcgcaaggtcacgaactggtcgacgag
ccggaatggccggaaaagaaaaagctgcaggaagagaaggccgcactcggcttttacctg
tcgggccatctgttcgacgcctatagggacgaagtgcgccgcttcgtgcgccagaagatc
ggcgagttgaaggaagggcgcgacaagctggtggcgggcgtgatcgcctcgctgcgcacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcaccggccagtgc
gaagtcacggttttcaacgagacgttcgaagcgcacaagcaactgttcaaggaagacgaa
ctgctggtcgtgcagggccaggcgcgtaacgacgcgttcacgggcggcatccgctttact
gtcgacacggtcatggatctcggccgcgcgcgctgccgttatgcggaggccgtgaaggtg
cagatgaacggcaatgcggacgcgctggccttgcgtcgtgtgctcgaagcgcatagcgcg
ggcaaggacgaaccgcaagcggcagcggcgccggcggcctcatcgcgtggcgggaacggc
ggtggcaacggtggtggccgtaatggtggcggctatggcggcggtgggcagcgtcaggcg
gtgcagatcccgaacgggctggccgtgcaggtggtttatcgcagccagaatgccgaaggt
gaaatgcgtctgggcgacgcgtggcgcgtgaagccgaccgacgaactactcgcggcgttg
cgcggcgagtttgccggaagctcgatcgagatcgtttattga
DBGET
integrated database retrieval system
