Paraburkholderia dioscoreae: PDMSB3_1389
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Entry
PDMSB3_1389 CDS
T08115
Symbol
uvrB
Name
(GenBank) excinulease of nucleotide excision repair, DNA damage recognition component
KO
K03702
excinuclease ABC subunit B
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDMSB3_1389 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1389 (uvrB)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDMSB3_1389 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PDMSB3_1389 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
UB2H
Kinesin
Motif
Other DBs
NCBI-ProteinID:
VVD27846
UniProt:
A0A5Q4ZEF4
LinkDB
All DBs
Position
I:1412390..1414495
Genome browser
AA seq
701 aa
AA seq
DB search
MPPHMSEQHLTEAEDTLDESKFVSFEGSPFQLYQPYSPAGDQPTAIDTLVEGVEDGLAFQ
TLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDY
YQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYH
RMILTLRTGDKLGQRDIIARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVE
LFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFY
SGGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIM
MLDESHVLIGQLNGMYNGDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSAT
PADYEQKTAGQVAEQLVRPTGLVDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTK
RMAEQLTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVS
LVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQI
AFNLENGITPRGVVKRIRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEK
QMMEHAKNLEFEKAAQTRDQLALLRQRVFGANVGDHVSGVE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccacatgtccgaacaacatctgactgaagccgaagatacgctcgacgaatcc
aaattcgtcagtttcgaaggctcgccgttccagctctaccagccgtattcgcctgccggc
gatcagcccacggcgatcgacacgcttgtcgaaggcgtggaggacggcctcgcgttccag
acgctgcttggcgtgaccggttcaggcaagactttcacaatggcgaacacgattgcgcgg
ctcggccgcccggccatcgtgttcgcgccgaacaagacgctcgccgcgcagctctattcg
gagttccgcgagttcttcccgcgcaatgcggtcgagtacttcgtctcgtactacgactat
taccagccggaagcgtacgtgccgcagcgcgacctgttcatcgagaaggactcgtcgatc
aacgagcacatcgagcagatgcggctgtcggctaccaagagcctgatggagcggcgcgac
gtggtgatcgtggcaacagtgtcggccatttacggtatcggcaatccgtccgaataccac
cggatgatcctgacgctgcgcaccggcgacaaactcggccagcgcgacatcatcgcgcgg
ctgatcgcgatgcagtacaaccgcaacgaagccgacttccagcgcggctcgtttcgcgtg
cgcggcgatacgatcgatattttcccggccgagcatgccgagatggcggtgcgcgtcgaa
ctgttcgacgacgaagtcgaaacgctgcagttgttcgatccgcttaccggacgcgtgcgt
cagaagattccgcgtttcacggtatatccgtcgtcgcactatgtgacgccgcgcgatacc
gtggtgcgcgcggtcgaaacgatcaagaccgaactgcgcgagcggctcgaattcttctat
agcggcggcaagctggtcgaagcgcagcggctcgaacagcgcacccgcttcgacctggaa
atgctccaggagctgggtttctgcaagggcatcgagaactactcgcggcacttttccggc
gcggcacccggcgagccgccgcctacgctggtcgattacctgccgccggacgcgatcatg
atgctcgacgagtcgcacgtgctgatcgggcagttgaacggcatgtacaacggcgaccgg
gcacgtaaagaaaatctggtcgactacggtttccgcttgccgtccgcgctcgataaccgg
ccgctcaagttcaacgagttcgaacgcaagatgcgccaggtggtgttcgtttccgccacg
ccggcggactacgagcagaagacggccggacaggtggcggagcaactggtgcgtcccacc
ggcctcgtcgatccggaaatcgaggtgcggccagcgcgtagccaggtcgacgacgtgctg
ggcgagatcaacgagcgcgtcaaggtgggcgaccgcgtgctcgtcaccgtgctgaccaag
cgcatggccgagcagttgaccgagtttctggccgaccacggcgtcaaggtgcgttatctg
cacagcgacatcgatacggtggagcgggtcgaaatcatccgcgatctgcggctcggtacc
ttcgacgtgctggttgggatcaacctgttgcgcgaagggctggatatcccggaagtgtcg
ctggtcgcgattctcgacgcggacaaggaaggctttttgcgcgccgagcgctcgctgatc
cagaccatcggccgggcggcgcggaatgtgaacggcaaggcgattctctacgccgacagg
gtcaccgactcgatgcgccgcgcgatcgacgaaaccgagcggcggcgtaacaagcagatc
gccttcaacctcgagaacggcattacgccgcgtggggtggtcaagcggattcgcgacatt
atcgacggcgtgtacaacgtcgacgacgcccgcgccgaactgaaggaacagcaggcgcgc
gcgaagttcgaagacatgtccgagaagcagcttgccaaagaactcaagcggctcgaaaag
cagatgatggagcacgccaagaacctcgagttcgaaaaggccgcgcagacgcgcgaccag
ctcgccttgctgcgccagcgggtgttcggcgcgaacgtcggcgatcacgtctccggcgtc
gagtaa
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integrated database retrieval system
