Paraburkholderia dioscoreae: PDMSB3_1425.1
Help
Entry
PDMSB3_1425.1 CDS
T08115
Name
(GenBank) DNA/RNA helicase, superfamily II, SNF2 family
Organism
pdio
Paraburkholderia dioscoreae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWIM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VVD32716
UniProt:
A0A5Q4ZLM9
LinkDB
All DBs
Position
II:1464893..1468345
Genome browser
AA seq
1150 aa
AA seq
DB search
MSSVFFDRDRIAEWLGEHTVAKARSVGPVTHVQWHGSTLSGEVQGTQPLPYKTRVRFRTD
GGAPWAQGECSCPVGRNCKHVAALLFAELDYHDEMDHVTHVHLDDEGETARDLAREPVAN
PGSAAGVRPELVSWLERFRARAEAADADAQKASAPRTQTLAYRLTWSRFHMRHEVVLYRA
RCNPDGAIVEVAEPWGNVEAALLKQPKFVSDEDLSILRGLWLGRSREDFGQFILRGTSGA
EMLQKLIATGRLFVDFTHGSGRDGPIPLSRGTDRPGRIEWEPLADERLRPVLCTEPRASM
VLPTEPVWYVDGVANEAGIVQSSLPFQQLPDYLAMPPISLAEAPLVASVLREIAPELPLP
PTHDASAIRVIDVDPVPVLTLNSHALPSATSKAGLRHSAAVELAGVSFDYEGVSINVDSS
VTLVPMPGGDVIHIRRRYEAEKKRLLELRKTGLQKVPTSRVHASRLLPDTMLGLADAEAW
SAFVNDSVPDLVSKGWRVTMAPEFRYNVIEIDAIEGTAHQAGDGWFDLEMGIRIGERNVR
LEPLLADLFRRDRRWLSGALETIADDEPIELKTEENKRLRLRADRLKPVVRVLVDLFDAL
GGSLAEGAPLRVASVDAGRLEALNGTGRWQFRGEDSIRQLAQRLQAGPGLREVPVPRGLK
AELRTYQQEGLNWMQFLREQDLAGVLADDMGLGKTVQTLAHILAEKEAGRLDRPALIVVP
TTLVHNWREEARRFAPELKVLVLNGPQRKERFEQIGEHELILTTYALLWRDQKVLAGHDY
HLLILDEAQYVKNATTKAAQAIRGLRARHRLCLTGTPLENHLGELWSQFDFLLPGFLGSQ
KDFTKRWRNPIEKNGDGVRRALLARRIRPFMLRRRKDEVARELPAKTTILCSVDLEGAQR
DLYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTLKAAGDAHETH
DRTDRIEKGARAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAEALEEAAIPYV
ILTGDTADRVTPVERFQQGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWNPAAENQATD
RAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAAGAAKFSDDDLDALF
APMPEIESGR
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagttttcttcgatcgggatcgcattgcagagtggctcggcgaacacaccgtc
gccaaggcgcgctcggtcggccccgtcactcatgtgcagtggcacggctccacgctcagc
ggcgaggtgcagggcacgcagccgcttccgtacaagacgcgcgtgcggtttcgtaccgac
ggcggtgcgccctgggcgcagggcgaatgcagctgtccggtcggccgcaactgcaagcac
gttgccgcgctgctgttcgccgagctcgactatcacgacgagatggaccatgtcacccac
gtccacctggacgacgagggcgagaccgcgcgcgacctggcgcgcgagcccgtggcgaac
cccggatcggccgctggcgtgcggcccgaactggtcagctggctcgagcgttttcgcgcc
cgcgccgaagctgcggacgccgacgcccagaaggcgagcgccccacgcacccagacgctc
gcctaccggttgacctggtccagattccacatgcgccacgaggtcgtgctgtaccgcgcg
cgctgcaatccggacggtgcgatagtcgaagtggccgagccctggggcaatgtggaagcg
gcgctcctcaagcagcccaaattcgtttccgacgaagacctgtcgatcctgcgcggtctg
tggctcggccgctcccgcgaggatttcgggcagttcatcctgcgcggcacgagcggcgcg
gagatgctgcagaaactcatcgcgacgggccggctgttcgtcgatttcacgcatggctcc
ggccgcgacgggccgatcccgctgtcgcgcggcaccgaccggcccggccggatcgaatgg
gagccgctcgccgacgagcgcctgcggcccgtgctctgcaccgagccgcgcgccagcatg
gtgctgccgaccgagccggtctggtatgtggacggcgtcgcgaatgaggcgggcatcgtc
cagtcgtcgctgccgttccagcagttgcccgattacctcgccatgccgcccatctcgctc
gccgaagcgccgctggtcgcctcggtgctgcgcgagatcgcgcccgagttgccgctgccg
cccacgcacgacgcgtccgcgattcgggtgatcgacgtcgatcccgtgccggtgctcacg
ctcaacagtcacgcgttgccgtcggcgacgagcaaggcgggtttgcggcattccgcggcg
gtcgaactggccggcgtcagtttcgattacgaaggcgtgagcatcaatgtggatagcagc
gtgacgctcgtgccgatgccgggcggcgacgtcattcatatccgccgccgctacgaggct
gagaaaaagcgtctgctcgaactgcgcaagaccggtttgcagaaggtgccgaccagccgg
gtccatgcgtcgcgcctgctgcccgacaccatgctcggcctggccgatgccgaggcgtgg
tccgcattcgtcaacgactcggtgccggatctcgtgagcaaaggctggcgcgtcacgatg
gcgcccgagttccgctacaacgtgatcgagatcgacgcgatcgaaggtactgcgcatcag
gccggcgacggctggttcgatctggagatgggcattcgcatcggcgagcgcaacgtgcgg
ctcgaaccgctgctcgccgacctgttcaggcgcgaccggcgctggctgagcggcgcgctc
gaaaccatcgccgacgacgagccgatcgagctgaagaccgaggagaacaaacgcctgcgc
ctgcgcgccgaccgcctgaaaccggtggtgcgcgtgctcgtcgatctgttcgacgcgctg
ggcggttcgcttgccgaaggcgcgccgctgcgcgtggcgtccgtcgacgcgggccggctc
gaagcgttgaacggcaccggccgctggcaatttcgcggtgaagattcgatccgccaactg
gcgcagcgtctgcaagccggtccggggctgcgcgaggtgccggtgccgcgcggcctgaag
gctgaattgcggacttatcagcaagaaggcctgaactggatgcagtttctgcgcgaacag
gatctggccggcgtgctcgccgacgacatgggtctgggcaagaccgtgcagacgctcgcg
catatcctcgcggagaaagaagcggggcgtctcgaccggcccgcgctgatcgttgtgccg
accacgctcgtgcacaactggcgcgaggaagcgcgccgcttcgcgcccgaactgaaagtg
ctggtgctgaacggcccgcagcgcaaggagcgcttcgagcagatcggcgaacacgagctg
attctgaccacgtacgcgctgctgtggcgcgatcagaaggtgctcgccgggcatgactat
cacctgctgattctcgacgaggcgcagtacgtgaagaacgccaccaccaaagccgcccag
gcgatacgtgggctgcgcgcgcggcatcggctgtgtctgacgggcacgccgctggagaat
catctcggcgagctgtggtcgcagttcgattttctgttgccggggtttctcggaagccag
aaagacttcaccaaacgctggcgcaatccgatcgagaagaacggcgacggcgtgcgccgc
gcgttgctggcgcgccgcatccggccgttcatgctgcgccggcgcaaggacgaggtcgcc
agggagttgccggccaagacgacgatcctgtgctccgtggacctggaaggggcgcagcgc
gatctgtacgaaaccgtgcgcacggcgatgcaggagaaagtgcgcgccgcggtcagcgcg
caagggctcgcgcgcagccatatcatcgtgctcgatgccttgctgaagctgcgccaggtg
tgctgcgacccgcgcttggtccgcacgctcaaggcggcgggcgatgcgcatgagacgcac
gacaggacggacagaatcgagaagggcgcgcgcgccatgcgatcagccaagctcgacctg
cttctgtcgatgttgccggaactgatcgaggaaggacgccgcgtgctgttgttctcgcag
ttcaccggcatgttgtcgctgattgccgaagcgctcgaagaagccgcgattccctatgtc
attctcaccggcgacacggcggatcgcgttacgccggtcgagcgtttccagcaaggcgag
gtgccgctcttcctgatcagcctgaaggcgggcggcgtgggcctgaacctgaccgccgcc
gacaccgtgatccactacgacccgtggtggaacccggctgccgagaatcaggcgacggac
cgcgcgcatcggctgggacaggacaagcccgtgttcgtgtacaagctgatcgcggcgggc
agcatcgaagaaaagatcgtggagttgcaggagcagaaggcgggactcgccgacagcatt
ctttctgaagacgccgcgggcgccgccaagttctcggacgacgatctcgatgcgctgttc
gcaccgatgccggaaattgaaagcggcagatga
DBGET
integrated database retrieval system
