Paraburkholderia dioscoreae: PDMSB3_1432.1
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Entry
PDMSB3_1432.1 CDS
T08115
Symbol
cobB
Name
(GenBank) Hydrogenobyrinate a,c-diamide synthase
KO
K02224
cobyrinic acid a,c-diamide synthase [EC:
6.3.5.9
6.3.5.11
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00860
Porphyrin metabolism
pdio01100
Metabolic pathways
pdio01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
PDMSB3_1432.1 (cobB)
Enzymes [BR:
pdio01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
PDMSB3_1432.1 (cobB)
6.3.5.11 cobyrinate a,c-diamide synthase
PDMSB3_1432.1 (cobB)
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Gene cluster
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Motif
Pfam:
GATase_3
CbiA
AAA_26
DJ-1_PfpI
PIN-TPR-GreABC
Motif
Other DBs
NCBI-ProteinID:
VVD32723
UniProt:
A0A5Q4ZHN9
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Position
II:complement(1476497..1477849)
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AA seq
450 aa
AA seq
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MSAPPKGTSPEASPEETSLGACPALFISAPASGQGKTTITAGLARYHRRLGRRVRVFKTG
PDFLDPMILARASGAPVFSLDLWMVGEAACRTLLAQAAAQADLILIEGVMGLFDGTPSSA
DLATTFGVPVLAVISAKAMAQTFGAVAFGLAQFRPQVPFYGVLANRVGSTRHAQMLQEAL
PPGLRWCGHIAAGDEIGLPDRHLGLHQADEIDDLDARLDHVADTLGGTALCELPPPVEFG
MPARQSLPRLLEGKTIAIARDAAFSFIYPANVALLESLGARIGYFSPLADEAPPEHADAL
YLPGGYPELHAAALAANTRSAAGIRAHASAGKPLVAECGGMLYLLDRLTDTQGVSTPMLG
LLPGHATMQTRFTALGMQQIDSRHGPMTGHTFHYSKLNTPLTPLCSATRPQSDAPGEAVY
RAGSIVASYMHAYWPSNPAFAAALFHGEAF
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcctcccaagggcacgtcccccgaagcgtctcccgaggagacgtcccttgga
gcgtgccccgccctctttatcagcgcgcccgcatccggccagggcaagaccacgatcacc
gcgggtctggcgcgctatcaccggcggctggggcgacgcgtgcgcgtcttcaagaccgga
ccggactttctcgatccgatgattctggcgcgcgcaagcggcgcgcccgtcttctcgctc
gatctgtggatggtgggcgaagccgcctgccgcacgctgctcgcgcaagcggcggcgcaa
gccgatctgatcctgatcgaaggcgtaatgggcctgttcgacggcacgccgagcagcgcc
gatctcgccaccacgttcggcgtgccggtgctcgcggtgatttcagcgaaggcgatggcg
cagaccttcggcgcggtcgctttcggtctcgcgcaattccggccgcaggtgccgttttac
ggcgtgctcgccaatcgcgtcggctccacgcgacatgcgcagatgcttcaggaagcgttg
ccgccgggactgcgctggtgcgggcacattgccgccggcgacgaaatcgggttgcccgat
cgtcacctgggcttgcaccaggcagacgaaatcgacgacctcgacgcgcgtctcgatcac
gtcgccgacacgctcggcggcaccgcgctctgcgaactgccgccgccggtcgaattcggc
atgccagcccggcagagcttgccgcgcctgctggaaggcaaaacgatcgccatcgcgcgc
gacgccgcgttctcgttcatctatccggccaacgtcgcgctgctggaatcccttggcgcg
cggatcggctacttctcgccgctcgccgacgaagccccgcccgaacacgccgacgcgctg
tatctgccaggcggctaccccgaactgcacgccgcggcgctcgcggccaacacccgcagc
gccgccggcattcgtgcgcacgcgagcgccggcaagccgctcgtcgccgaatgcggcggc
atgctctatctgctcgaccggctcaccgacacgcaaggcgtgagcacgccgatgctcggc
ctgctgcccggccacgcgacaatgcaaacgcgcttcaccgcgctcggcatgcagcagatc
gacagccggcacgggccgatgaccggccacacgtttcactactcgaagctgaacaccccg
ctcacgccgctttgttcggccacccggccgcaaagcgacgcacccggcgaggccgtctac
cgtgccggctcgatcgtggcgagctatatgcacgcttattggccctccaacccggccttt
gcggccgccctgttccatggcgaagccttttga
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