Paraburkholderia dioscoreae: PDMSB3_1616.1
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Entry
PDMSB3_1616.1 CDS
T08115
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase I, NADP-dependent
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00250
Alanine, aspartate and glutamate metabolism
pdio00310
Lysine degradation
pdio00350
Tyrosine metabolism
pdio00650
Butanoate metabolism
pdio00760
Nicotinate and nicotinamide metabolism
pdio01100
Metabolic pathways
pdio01120
Microbial metabolism in diverse environments
Module
pdio_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PDMSB3_1616.1 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PDMSB3_1616.1 (gabD)
00310 Lysine degradation
PDMSB3_1616.1 (gabD)
00350 Tyrosine metabolism
PDMSB3_1616.1 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PDMSB3_1616.1 (gabD)
Enzymes [BR:
pdio01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PDMSB3_1616.1 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PDMSB3_1616.1 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PDMSB3_1616.1 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
VVD32900
UniProt:
A0A5Q4ZTY7
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Position
II:1676789..1678261
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AA seq
490 aa
AA seq
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MTRTFELGELIRSDNFIDGTWAPAQDNVRFAVTNPASGEIIAEVADSSPADARAATDAAA
RALPAWRARLPKERAAVLHRWHALIMANLDALGALISLEQGKPLVEGKGEVAYGASYVAW
FAEEATRIYGDLIPQQQRGKRMTAVKEPVGIVAAITPWNFPLAMIARKIAPALAAGCTVV
AKPAEDTPLTASALVLLAHEAGVPPGVLNLITASRDHAVAAVAEWLHDARVRKITFTGST
PVGKYLARESAETLKKLSLELGGNAPFIVFDDADLDAAVAGLMAAKFRNGGQTCVCPNRV
YVQAGVYERFGALLAERVGALKVAPATDPAAQIGPMINSRALDKIARHVDDAVAHGARVL
TGGKRLAELGPHYYAPTVLADATAAMQLNSEETFGPIVPLFRFEDEAEAVNAANDTPFGL
AAYFYSEGVKRIDRVARALEAGIVGINEGAVASEAAPFGGVKESGYGREGSKYGLDDYLS
IKYLCQGNLE
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcacattcgaactgggcgaactgatccgctccgacaatttcatcgacggcaca
tgggcgcccgcgcaagacaacgtccgctttgccgtcaccaatcccgcgagcggcgagatc
atcgctgaagtggccgacagcagccccgccgacgcccgcgccgccaccgacgccgccgcg
cgcgccctgcccgcgtggcgcgcgcgcctgccgaaggaacgcgctgccgtgctgcaccgc
tggcacgcgctgatcatggcgaatctggatgcgctcggcgcgctgatctcgctcgaacag
ggcaagccgctcgtggaaggcaaaggcgaagtcgcctacggcgcgtcgtatgtcgcgtgg
ttcgcggaagaagccacgcgcatctacggcgatctgattccgcagcagcagcgcggcaag
cgcatgacggccgtgaaggaaccggtcggcattgtcgccgccatcacgccgtggaatttc
ccgctcgccatgatcgcgcgcaagatcgcgccggcgctcgccgccggctgcacggtggtg
gccaaaccggcggaagatacgccgctcaccgcctcggcgctggtcctgctcgcgcacgaa
gccggcgtgccgccgggcgtactgaacctcatcacggcctcgcgcgatcacgcggtcgcc
gccgtcgccgagtggctgcatgacgcgcgcgtgcgcaagatcaccttcaccggctccacg
ccggtcggcaaatatctggcgcgcgagtcggcggaaacactcaagaaactgtcgctggaa
ttgggcggcaacgcccccttcatcgtattcgacgacgccgacctggacgccgccgtcgcc
ggactcatggcggccaaattccgcaacggcgggcagacctgtgtgtgcccgaaccgcgtg
tatgtgcaagccggcgtctacgaacggttcggcgcgttgctggccgagcgggtcggcgcg
ctgaaggtcgcgcccgccaccgacccggccgcgcagatcggcccgatgatcaacagccgt
gcgctcgacaagatcgcccgccatgtggacgacgccgttgcgcacggcgcgcgcgtgctg
accggcggcaagcgccttgccgaactgggcccgcactattacgcgcccacggtcctcgcc
gacgccaccgccgcgatgcagttgaatagcgaagagaccttcggcccgatcgtgccgctg
ttccgtttcgaagacgaagccgaagcggtcaacgccgctaacgacacgccatttggcctc
gccgcgtatttctacagtgaaggcgtgaaacggatcgaccgtgtggcgcgcgcgctggaa
gcgggcattgtcggcatcaatgaaggcgcggtcgcaagcgaagccgccccgttcggcggc
gtaaaggaatcgggctatggtcgcgaaggctcgaagtacggtctcgacgactatctgtcg
atcaaatacctctgccagggcaacctcgaatga
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