Paraburkholderia dioscoreae: PDMSB3_1668
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Entry
PDMSB3_1668 CDS
T08115
Symbol
recC
Name
(GenBank) RecBCD enzyme subunit RecC
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PDMSB3_1668 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1668 (recC)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PDMSB3_1668 (recC)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PDMSB3_1668 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
VVD28124
UniProt:
A0A5Q4Z1Y1
LinkDB
All DBs
Position
I:1718184..1721567
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AA seq
1127 aa
AA seq
DB search
MLQLFYSNRYETLVGALLDDLAQAPSDPWTAQPVIVPSAAVRRRLELDIAARQGICANVN
FGYLAQWLWAQIGGVIEVPKHSPFAPDRLVWRCYRLLGQLNDGGETLPWNASPRLRTYLD
AADASMRYELARRVATVLDHYLTYRPEWLLQWQKGGSIFASGAADDSGPRLVGASEAARE
DERWQAALWRAVLAELAGNGQTAAAALPPAYRFLDEIGTLDLEAISNAQWPEAVSVFALP
TMPPLHVALLRALSRWVDVRLYVMNPCREFWFDVVSEGRVQALDAAGQLDYQEVGHPLLA
EWGRQTQAQLHMLHELTESAASGETGDFTENPQPSWLAAVQNGILDLRKETDADELLIEQ
GIEVHVCHSLSRQLEVLHDRLLGWFDEFDDLQPSDVLVAVSDLAAAGPLIDAVFGTTPPG
DTRRIPYRITGLPPSQANPVARLLLDWLALPERSVGAPDLIEWLRVDAIAVRYGIDASSL
EAAQEWLAAAGARRGLSPVEPTGEHVPIARHTLADALTRLYLGYAMPDGGEPVDAWLPVE
GADGADAELLGRLSRFVDDIDSFAANCAVERTPAEWTQLLLDTLAQCFDGGVEFAHSLAA
VRDAIDQMGDAMQAGAQEVAMPAAVVRGALTEALDDPARGGVPWGSVTFSSLTSLRGLPY
RVVCLLGMDDGVLPSLARADEFDLMAAFGKAGDRQRRDDERNLFLDLLLAARDRLFIAYT
GRSIRDNSPLPPAALVDELLDHLAQVSAGEGASPAEVESARHAFIVEHPLQAFASDYFSP
QSGLFSYDADRAELATLLAAPAHPAAAPFFDRPLPPEEPAPIAFDEFVRFWRHPARALLR
DRLGIVLSDAQGELLDTEPFELDYAGRDALADRLLPVLLDAATEDDVIFERVRRVAAASP
ELPGGATGAVWRARELGALRQLADSVRREAASGVERLPFVLDIAPRWPESAEIAGPLFGP
HDALLRQAAQTPLQLHGSLNLLTETGQVIFRYAKPTARDYLSAWLAHLVYCAARPDGPRR
TVWHGSGESFELTPVAAPLDELAPLAALFKAGRMLPLRFFPKSAWARVSESESAALGVWI
NDRVRGESDDPALRIALRGTPLTLEEPFGSLAAIVFKPLIQHLRSAS
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgctccagctcttctactcgaaccgctacgaaacgcttgtcggcgcgctgctcgacgac
ctggcgcaagcgccgtccgacccctggaccgcgcagcccgtgatcgtcccgagcgctgcc
gtgcggcgccgtctcgagctcgatatcgccgcgcgccagggcatctgcgcgaatgtcaac
tttggttatctcgcgcaatggctgtgggcgcagatcggcggcgtgatcgaggtgccgaag
cattcgccgttcgcgccagaccggctcgtatggcgctgctaccggctgctgggccaactg
aacgacgggggagaaacgctgccctggaatgcgtcgccgcgtctgcgcacgtatctcgac
gcggcggacgcttcgatgcgctacgaactggcgcggcgcgtggcgaccgtgctcgaccac
tatctgacgtatcgcccggaatggctgctgcaatggcagaagggcggctcgatcttcgcg
agcggtgcggcggacgactccggcccgcgtcttgtcggcgcgagcgaagcggcgcgcgaa
gacgagcgctggcaagccgcattgtggcgcgcggtgctcgcggaactggcgggaaacggg
caaacggccgcagccgcgttgccgcccgcctaccgttttctggatgaaatcggcacgctc
gatctcgaggccatctcgaacgcacagtggcccgaagcggtcagcgttttcgcgctgccc
accatgccgccgttgcacgtggcgctgctgcgcgcgctttcgcgctgggtcgacgtgcgc
ctgtacgtgatgaacccgtgccgcgagttctggttcgacgtggtcagcgaagggcgtgtt
caggcgctcgacgccgccggccagctcgactatcaggaagtcggccatccgctgctcgcc
gagtggggccggcagacccaggcgcaattgcacatgctgcacgagctgaccgagagcgcg
gcctccggcgagaccggcgatttcacggaaaatccgcaaccgagctggcttgccgccgtg
cagaacggcatcctcgatctgcgcaaggagaccgacgccgacgaactgctgatcgagcaa
ggcattgaggtccacgtttgccacagtctgtcgcggcagctcgaagtgctgcacgatcgc
ctgctcggctggttcgacgaattcgacgaccttcagccgtccgacgtgctggtcgccgta
tccgatctcgcggcggccggccccttgatcgacgccgtgttcggcaccacgccgcctggc
gacacccgccgcattccgtatcggatcaccggcttgccgccgtcgcaggccaatccggtc
gcgcggttgctgctcgattggctggccttgcccgagcgcagcgtgggcgcgccggacctg
atcgaatggttgcgtgtcgacgccattgccgtgcgttacgggatcgacgcgagttcgctc
gaagccgcacaggaatggctggccgcggccggcgcgcgtcgtgggctttcaccggtcgag
ccgaccggcgaacatgtgccgatcgcgcgtcatacgttggcggatgcgcttacgcgtctg
tatctcggctacgccatgccggacggcggcgaaccggttgacgcgtggctgccggtcgaa
ggcgccgacggcgcggatgccgagctgctcggccgcctgtcgcgcttcgtggacgacatt
gacagcttcgcggcgaattgcgcggtcgaacgcacgcctgccgaatggacccaactgctg
ctcgacacgctcgcgcagtgtttcgacggcggcgttgaattcgcccattcgctcgccgcc
gtgcgcgacgcgatcgaccaaatgggtgacgcaatgcaagccggcgcgcaagaggtcgcg
atgcccgccgcagtggtgcgcggcgcgctcaccgaagcgctcgacgacccggcgcgcggc
ggcgtgccctggggcagcgtgacgttttcgtcgttgaccagtttgcgcgggttgccgtat
cgcgtggtgtgcctgctcggcatggacgacggtgtgctgccgagtctcgcgcgcgccgac
gagttcgatctgatggccgcgttcggcaaagccggcgaccgccagcggcgcgacgacgaa
cgcaatctgttcctcgatctgctgctcgccgcgcgcgatcgcctcttcattgcttatacg
ggccgcagcattcgcgacaactcgccattgccgccggccgcgctggtcgacgaattgctc
gaccatcttgcgcaggtgtcggcgggcgagggcgcgagtccggctgaagtcgagagcgcg
cggcatgcgttcattgtcgaacatccgttgcaggcattcgcatcggactatttctcgccg
caatccggtctcttcagctacgacgcggatcgcgccgagctggccacgttactggccgcg
cccgcacatcccgccgccgcacctttcttcgatcgacccttgccgccagaagagccggcg
ccgatcgccttcgacgaattcgtgcgcttctggcgtcatcctgcgcgggcgttgttgcgt
gaccggctgggcatcgtgttgtcggacgcacagggcgaattgctcgacaccgagccgttc
gaactggattacgccgggcgcgatgcattggcggatcgtcttttgccagtcctgctcgac
gccgctacggaagacgacgtcatcttcgaacgcgtgcgccgcgtggcggcggccagcccg
gaattgccgggcggcgcgaccggcgcggtgtggcgcgcacgtgagctcggcgcgttgcgc
cagcttgccgacagcgtgcgccgcgaagcggcttcgggtgtcgagcgtttgccgttcgtg
ctcgacatcgcaccgcgctggccggagagcgcggagatcgccggcccgcttttcggcccg
catgacgcgctgctgcggcaagccgcgcaaacgccgctgcaactgcacggcagtctgaat
ctgctcaccgaaacaggacaagtgattttccgctacgccaaacctaccgcacgcgactat
ctgtcggcgtggctcgcgcatctggtgtattgcgccgcacggccggacggtccgcgccgc
accgtatggcatggcagcggcgagagcttcgaactcacaccggtcgccgcgccgctcgac
gaactggcgccgcttgccgcgttgttcaaggcagggcgcatgctgccgctgcgctttttc
ccgaagagcgcgtgggcccgggtcagcgaaagcgaatccgcggcgctgggcgtctggatc
aacgaccgcgtgcgcggcgagtccgacgaccccgcgttgcgcatcgccttgcgcggcacg
ccgctcacgctcgaggaaccgttcggcagtctcgccgcgatcgtgttcaagccgctcatc
cagcatctgcggagcgcgtcatga
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