Paraburkholderia dioscoreae: PDMSB3_1669
Help
Entry
PDMSB3_1669 CDS
T08115
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PDMSB3_1669 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1669 (recB)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PDMSB3_1669 (recB)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PDMSB3_1669 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Herpes_TK
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
VVD28125
UniProt:
A0A5Q4YSY7
LinkDB
All DBs
Position
I:1721564..1725256
Genome browser
AA seq
1230 aa
AA seq
DB search
MSGGKRSYALVAEELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELHRAIEMDDDGGDPFVRRLFETTLAPERGIEREAALKMV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
VAHAHPAFAAWLVAKHAGPASLDEQLARRLKKPLAQLRWGKLDTSGNGADPQAGFDAACE
LWHAERDTIVSLLAEAQERLSKTSHKPDHVSGAIAAWTEYFAQGDCHAPPPKAALKLTAS
ALKKATKVKFEPPVHPFFEHAEALAAAVVAAEAAQRARWLSLVQAWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAVNQRSTAPIVEACNRLFEANPQAFV
LDGLDYQPVRAGERRRPPFSDPQASAGDFRIWTLPQGDAALNKREAQREASEACAAEIVR
LLRGAREGMVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSPADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALR
EPPSSGLPDAREYHDETGTAVLHYGCDDEEAEHASRYAVREQAAERARLVYVALTRAVYR
CYLVAGTYQSSRSTRESRRSVLNWLVGGSGHSFDDWLAEPPDEAALSARWQALAGGSITL
QPLPRPERRVPLESLQDRSAHMQARANRRPLRDQWRMASFSGLIAAGSKADEAHAPVEEV
RPDHDEIADALVVTPVPAPHPQAHAEDDVLAFPRGAAAGDCLHRMFELADFTAPPTWTDA
IRGALRERPAPAAPELAARLPAMMHNLLRDVVATELQPGMRLANLDPRRRLNELEFLFAA
PSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGDTAA
DYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYDTHIGGYLYLFVRGVRPHWH
DADGPAGVHRRRPAFELVALLDAAMIGGVA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggggcaagcggagttacgcgctggtggccgaggaactcgacgtcttcgcctgt
tcgctcgacggcgtgaatcagatcgaggcttcggcgggcaccggcaagacctggaatatt
tgcgcgttgtatgtgcggctgctgctcgaaaagaacctgaatgcggatcagattctggtc
gtcacgttcactaaggcggcgacggcggaattgcacgagcgcattcgcggccgtctcgcc
gaactgcaccgggcgatcgaaatggacgacgacggcggcgatccgttcgtccgccgtctc
tttgaaacgacgctggcgccggagcggggcatcgagcgcgaggccgccttgaaaatggtg
cgacgcgcgctgcgcaccttcgaccaggcggcgatccacaccattcacgcattctgtcag
cgcgcgttgcaggaagcgccgtttgccgcggccatgccgttcgctttcgaaatggaagcc
gacgacgcggccttgcgcttcgaaatggcggctgatttctggcgcgagcaggtggagccg
gtggcacatgcgcatcccgcatttgccgcgtggctggtggccaaacacgccggtcccgct
tcactcgacgagcagctcgcgcggcgtctgaaaaagccgttggcgcagttgcgctggggt
aagctcgacacgagcggcaatggcgcggatccgcaagcaggcttcgatgcggcctgcgag
ctctggcatgcagagcgcgacacgatcgtcagtttgctggccgaggcgcaggagcgcttg
agcaagacttcgcacaagcccgatcatgtgagcggcgccatcgccgcatggaccgaatac
ttcgcgcagggcgactgccatgcgccgccgccgaaagcggcgttgaagctgacggcttca
gccttgaagaaggccaccaaggtgaagttcgagccgcccgtgcatccgttcttcgaacac
gctgaagcgctggcggcggccgtggtcgcggccgaagccgcgcaacgcgcgcgctggctc
tcgctcgtgcaggcctggctcgactacgcacccgccgaactggtggcgcgcaagcgcaca
cgccgggtcgtgtcgttcgacgatctgctgtccaacctgtatcgcgcgctcgccgcgcac
ccctggcttgccgacgctttgcgcgcgcgttatccggctgcgctgatcgacgagtttcag
gacaccgatccgctgcagttcgcgatcttcagccgcattttcgcgccggccggtccgctg
tttctggtcggcgatccgaagcaggcgatctacagttttcgcgcggcggatctgcatacc
tatctggcggcgcgcgaggcggcatccgcgtgctacacgctggccgtcaatcagcgctcg
accgcgccgatcgtcgaggcatgcaatcggctcttcgaagccaatcctcaggcattcgtg
ctggacggtctcgactatcagccggtgcgtgcgggcgaacggcgcaggccaccgttctcc
gacccgcaggcgagcgccggcgacttccgtatctggaccttgccgcagggcgatgccgca
ttgaacaagcgcgaggctcagcgcgaagcgagcgaggcgtgcgccgccgagatcgtgcgg
ctgctgcgcggcgcgcgcgaaggcatggtgacgatcggcgacgcgccgctcgcgccgggc
aacatcgccgtgctggtgcaaacgcacaagcagggcagtctgatcaaacgcgtgctggcc
gcgtggggtgtcggcagcgtggaactggcgcaggcgtcggtgttcgcgacgctcgatgcc
gagcagatcgaacgcgtgctcgccgcggtcgatacgccgggcgatctgcgccgtttgcgc
gccgcgctggcaaccgactggctgggcctcgacgccgccgcgttgtggcgtctcgagcag
gtggccgacgcgccgtcgcccgccgacgaccccgcgcacgccgccgacgcgatgggctgg
gtggaacgtttttcgcgctaccgcacgctgtggcatgagcgcggcttcgcggtgatgtgg
cgcacgctgatgcgtgagctgcgtgtcgcgcaacggctggttgccggaccggacggcgag
cgtcgtctgacgaacgtgaaccacctggccgaactcgtgcaggcgcgcgccgcgacgcaa
ccaggtatagcaccgaccttgcgctggctcgccgcgcaacgcacccagggcggtggcgaa
gaggcgcagttgcgactcgaatcggatcgcaacctcgtgcagatcgttaccgtccacaaa
tcgaaagggctcgaatacgcggtggtgttctgtccgttcctgaacgatggcgcgttgcgc
gagccgccgtcgtccggcttgccggatgcccgcgagtaccacgacgaaacaggcacagcg
gtgctgcactacggttgcgacgacgaagaagccgaacatgcgtcgcgctacgcggtgcgc
gagcaggcggcggagcgggcgcggctcgtctacgtggcgttgacgcgcgcggtgtaccgc
tgctatctggttgccggcacgtatcagtcgtcgcgctcaaccagggaatcgcgccgcagc
gtgctgaactggctggtgggcggcagcggccacagtttcgacgactggctcgccgagccg
cccgacgaagccgcgttgtcggcgcgctggcaggcgctggcgggtgggtcgatcacgctg
cagcccttgccgaggcccgagcgccgcgtgccgctggaaagcctgcaggaccgcagcgcg
catatgcaggcgcgggccaatcgcaggccgctgcgcgatcagtggcgcatggcgagtttc
agcggcctgatcgccgcgggcagcaaagctgatgaggcgcacgcgccggtggaagaagtg
cgccccgatcacgacgaaatcgccgatgcgctcgtggtcacgccggtgcctgcaccgcac
cctcaagcccacgcggaagacgatgttctcgcgtttccgcgcggcgcggcggcgggcgac
tgtctgcaccgcatgttcgaactcgccgatttcaccgcgccgcctacgtggaccgacgcc
attcgcggcgcgctgcgcgagcgtccggcgccggctgcgcctgagctcgccgcgcgcctg
cctgcgatgatgcacaacctgctccgggacgtggtcgctaccgaactgcagcccggcatg
aggctcgcgaatctggatccgcgccggcgtctgaacgagctcgagtttctgttcgcggcg
ccgtcgctggatttccctgcgttgcgggaactgctgatcgaacacggctatcctgacgtc
gcactggaacccggcgtgctgcgcgggttcgtcaaaggatttatcgacatgatcgtcgag
cacgacggacgtttctggatcgtcgactggaagtcgaaccatctgggcgacacggccgcc
gactacgccgccgcgccgctcgaagcggctatggcgagtcacgcgtatcacctgcaggcg
ctgctttatacggtcgcattgcatcgttacctgaaaacgcgggtgcgcgattattcgtac
gacacgcacatcggcggctatctgtatctgttcgtgcgcggcgtacgtccgcattggcat
gacgccgacgggccggcgggcgtgcacaggcggcgcccggcattcgaactggtcgcgctg
ctcgatgcggcgatgatcggaggtgtcgcatga
DBGET
integrated database retrieval system
