Paraburkholderia dioscoreae: PDMSB3_1925.1
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Entry
PDMSB3_1925.1 CDS
T08115
Name
(GenBank) DNA helicase, Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PDMSB3_1925.1
09124 Replication and repair
03420 Nucleotide excision repair
PDMSB3_1925.1
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdio03021
]
PDMSB3_1925.1
03036 Chromosome and associated proteins [BR:
pdio03036
]
PDMSB3_1925.1
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1925.1
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PDMSB3_1925.1
Transcription machinery [BR:
pdio03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PDMSB3_1925.1
Chromosome and associated proteins [BR:
pdio03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PDMSB3_1925.1
DNA repair and recombination proteins [BR:
pdio03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PDMSB3_1925.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
YliH
DUF7711
Motif
Other DBs
NCBI-ProteinID:
VVD33209
UniProt:
A0A5Q4ZD46
LinkDB
All DBs
Position
II:complement(1999849..2002113)
Genome browser
AA seq
754 aa
AA seq
DB search
MTYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGMAGHVTVAGRRASGYETEITLTGTHRS
LTVRGRADGYDPAANRLEEVKTHRGDLERMPANHRTLHWAQALVYGHLLCRTRELAGLTV
ALVYFDIGTQKEVLLTQTHTARDLEIFFVEQCERFLDWAVQEEAHRAARNSALSALQFPH
GQFRSGQRELAVSVYRSARDGKPLMAQAPTGIGKTLATIFPLLKACASDQIDRVFFLTAK
TPGRALALDAIETLHRVDARLPLRTLELVARDKACEHPDKACNGESCPLARGFYDRLDAA
RSAALAGPRLDRAAVREAALAHDICPYYLAQELARWADVVVGDYNYYYDSNAMLYALTQI
NQWRVGVLVDEAHNLLDRARRMYTASLDQTAFRLARKTAPAALRKPLERLQREWNALKRA
QTASYQVYAGIPGKLLSAAQNLISAVTDQLAEAPLSIDEASLRFFFDAMHFVALAEQFGE
HSIFDITLATDRYAPRDKTTAALCVRTVIPAPFLTPRYAAARTTVMFSGTLNPHHFYRDT
LGLPEATQWLDVEGPFRAEQLQVRVAGNVSTRWRDRERSLIPIVDLIARQYATQPGNYLG
FLSSFEYLQRVVALMRERHPDLPVWAQEPGMDEAARDAFLARFRTMNEGVGFAVLGGAFS
EGVDLVGQQLIGAFIATLGLPQMNEINEQMRRTMEVKFGNGYDYMYLYPGLQKVVQAAGR
VIRTEQDQGVVHLIDDRYRRAEVRRLLPRWWDVQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgacctacgtggtcgccgtgcgagcgatgtgcgagttcaccgcgaggcgcggcgatctg
gatctgcgcttcacgcccgcgcccacctcgctcgaaggcatggcgggccacgtcacggtc
gccggacggcgcgcgagcggctacgaaaccgaaatcacgctgacgggcacgcatcgcagc
ctgaccgtgcgcggacgcgccgacggctacgacccggcggcgaaccggctggaagaggtc
aagacgcatcgtggcgatctcgaacggatgcccgccaatcaccgcacgttgcattgggcg
caagcgctcgtctatggtcatctgctgtgccgcacgcgcgagcttgccgggttgaccgta
gcgttggtgtacttcgatatcggtacccagaaggaagtgctgttgacgcaaacgcatacc
gcgcgcgacctggagattttcttcgtcgagcaatgcgagcgttttctggattgggccgta
caggaagaggcgcatcgggccgcgcgcaactcggcgctgagtgcgttgcagtttccgcat
gggcagtttcgcagcggccagcgcgaactggcggtgtcggtctatcgttcggcgcgcgac
ggcaagcctttgatggcccaggcgccgaccggcatcggcaagacgctcgcgacgattttt
ccgttgctcaaggcgtgcgcgtcggaccagatcgaccgggtgttctttctgaccgccaag
acgccgggccgcgcgctggcgctggatgcgatcgaaacactgcatcgggtcgacgcgcgc
ctgccgttgagaaccctcgaactggtcgcacgcgataaagcctgcgagcatccggacaaa
gcctgcaacggcgagtcctgtccgctcgcgcgcggcttctacgaccggctcgacgcggcc
cgcagcgcggcgctggcaggcccgcgcctggaccgtgcggcggtgcgcgaagcagcgctt
gcgcacgacatctgtccgtactatctggcgcaggaactggcgcgctgggccgacgtggtg
gtcggcgattacaactactactacgacagcaacgccatgctgtacgcgctcacgcagatc
aaccagtggcgggtgggcgtgctggtggacgaggcgcacaatctgctcgatcgtgcccgc
cgcatgtacaccgcctcgctcgatcagacggcattccggctcgcgcgcaaaacggcgccg
gccgcgctgcgcaagccgcttgaacggctgcaacgcgagtggaacgcgctcaaacgcgct
cagaccgcgagctatcaggtctacgccgggatccccggcaaactgctctccgccgcgcaa
aatctgatcagcgccgtcacggaccaactggcggaagcgccactttccatcgacgaagca
tcgctgcgcttcttcttcgacgccatgcatttcgtcgcgctggccgagcagttcggcgag
cattcgattttcgacatcacgctcgccacggatcgttacgcgccacgcgacaaaaccact
gccgcgctttgcgtgcgcaccgtgattcccgcgccgtttctcacgccgcgctacgcggcc
gcgcgcactacggtgatgttctccggcacgctcaacccgcatcatttctatcgcgatacg
ctggggttgcccgaagccacgcaatggctcgacgtggaagggccgtttcgcgcggagcag
ttgcaggtgcgcgtggccggcaacgtgtcgacgcgttggcgtgaccgcgagcgttcgctg
attccgatcgtcgacctgatcgcccggcaatacgcaacgcagccgggcaattatctgggc
tttctgagcagcttcgagtacttgcagcgcgtggtcgcgttgatgcgcgagcggcacccg
gacttgccggtctgggcgcaggagcccggcatggacgaagccgcgcgcgacgcgtttctc
gcgcgcttccggaccatgaacgagggcgtgggcttcgcggtgctcggcggtgcgttttcg
gaaggtgtcgacctggtcggtcagcagttgatcggcgcgttcatcgccacgctcggcttg
ccgcagatgaacgagatcaacgagcagatgcgccgcacgatggaagtgaagttcggcaac
ggatacgactacatgtatctgtatcccggtctacagaaggtggtgcaggcggcagggcgt
gtgatccgcacggagcaggaccagggtgtggtgcatctgatcgatgaccggtatcggcgg
gccgaagtgcggcgtttgctgccgcgctggtgggacgtgcaatag
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