Paraburkholderia dioscoreae: PDMSB3_1952.1
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Entry
PDMSB3_1952.1 CDS
T08115
Symbol
gmr
Name
(GenBank) modulator of Rnase II stability
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PDMSB3_1952.1 (gmr)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
PDMSB3_1952.1 (gmr)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_8
Diguanyl_cycl_sensor
PAS_3
Motif
Other DBs
NCBI-ProteinID:
VVD33236
UniProt:
A0A5Q4ZMR5
LinkDB
All DBs
Position
II:2030998..2033001
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AA seq
667 aa
AA seq
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MNDDQHDQVLYAQFGTSSPCWRLSNDSNALELTPVTGDVPANVAIPLNPQQASQIRCLTG
VTSHLVLDVRLFGEPLRLHLVGKKLTSNSWAGTASAYDDTESVARDLVHGLSFAEQVVSE
VNSVVVILDRHGRIQRFNRLAEELTGVKEENIIGRNVWALFMSTEDGAASSQNIAGFFNR
GVSYEVERRVKTVHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANT
DSLTGLANRNAIQDRIRAAIEDAAPGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSA
AISLCLNEGDTLARLGGDEFIVLAAKGTAHELEVTAQRILERMRTPFSLGLVEVYTGCSI
GIALYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGID
EGQLTLHYQPKLSLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVME
TAAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQHANLDPCLIDLELTESCLI
EDETAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADPKAQ
ALVRSMVVVAQELNFKVVAEGIETESEELFMKGLGVDYVQGFLYGQAMPAAEFERWLQDR
QKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaccaacacgaccaggtgctttatgcccagttcggcacaagcagcccatgc
tggcgtctgtcgaacgacagcaacgcgctcgaactcacgcccgtgaccggggacgtgccc
gccaatgtcgccattccgctgaatcctcaacaagcctcgcaaatccgctgcctcaccggc
gtcacctcgcatctcgtgctcgacgtgcggctattcggcgagccgttgcgtctgcatctg
gtcggtaaaaagctcaccagcaactcgtgggccggcaccgcctcggcctatgacgacacc
gagtccgtcgcgcgcgatctggtccacggtctttcgttcgccgaacaggttgtctccgaa
gtgaattcggtcgtcgtgatcctcgaccggcacggccggatacagcgcttcaaccggctc
gcggaagagctcaccggcgtcaaggaagagaacatcatcggccgcaacgtgtgggcgctg
ttcatgtctactgaagacggcgcggcatccagccagaacattgcgggcttcttcaatcgc
ggcgtgtcgtacgaagtcgagcggcgcgtcaaaacggtgcacggcgaacggctctttctg
tttcgcaacaagttcgttcacagcggcagcggcgtcgaagaacaattcctgatctgctcg
ggcacggacatcaccgaggaacggctcgcgcaggaacgcctcaccgagctcgcgaacacc
gactcgctcaccggccttgcgaaccgcaacgcgatccaggacagaatccgcgccgccatt
gaagacgccgcgccaggcgaagcggtcggcgtgctgttcctcgacctcgacaacttcaag
aaggtcaacgatcactacggccacgtcttcggcgaccgcctgattcgcgacgtatcggcg
gccatcagcctctgtctgaacgaaggcgatacgctcgcgcgactcggcggcgacgaattc
atcgtgctcgcggccaagggcacggcgcatgaactcgaagtcaccgcgcagcgcattctc
gaacgcatgcgcacgccgttcagcctcgggctcgtggaggtctacacgggctgctcgatc
ggcatcgcgctgtatccggaacatggcgatagcctcgaatcgctgatccgctcagcggat
accgccatgtacgtcgccaaagacgaaggcaagcgtacgcaccgcgtgttctcgccggag
atgaatcgcaaggtcgccgagtacatgtggctcgacaccaacctgcggcgcggcatcgat
gaaggccagctgacactgcattaccagccgaaactatcgctcgccaccggagcggtccag
ggcgccgaagcactggtgcgctggaattcgccggagcgcgggcagatcatgccggcggag
ttcatccgttatgcggaagagtccggtctgatcggcgtgctgggccgctgggtcatggaa
acggccgcgaaacaggccgccaaatggaaagcggacggctacaacctgcgcatcgcgatc
aacgtgtccgctcggcaactggtggatacggcggtggtccgccatttcagcgaggcgctc
cagcacgcgaatctcgacccctgcctgatcgatctcgaactgaccgagagctgcctgatc
gaagacgaaacggccgcgatcgatctgatcaagcagttccggcagctcggcgcgcaggtt
catctggatgacttcggcacgggctattcgtcgctgtcgcaactcggccgtattccgctc
gacgtcatcaagctcgatcgcagcttcgtgcgctcgatcaacgccgaccccaaagcgcaa
gcgctggtgcgctccatggtggtcgtcgcgcaggagctgaacttcaaggtggttgccgaa
ggaatcgaaaccgagtcggaagaattgttcatgaagggcctgggcgtcgattacgtacag
ggttttctgtacgggcaggccatgccggcggctgaattcgagcgctggttgcaggataga
cagaagctcagactgattgcctga
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