Paraburkholderia dioscoreae: PDMSB3_1982
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Entry
PDMSB3_1982 CDS
T08115
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDMSB3_1982 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1982 (mfd)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDMSB3_1982 (mfd)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PDMSB3_1982 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
VVD28438
UniProt:
A0A5Q4ZD24
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All DBs
Position
I:complement(2038284..2041766)
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AA seq
1160 aa
AA seq
DB search
MSDIAASSQYSPPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLAQEIGFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNSVPSAGIEYYLPLFFDDTATLFHYLPEGAQLAFVGDLDAA
IRRFTNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFFTLAKPFARLALPANAGGGWSTPL
PNLAIDRHAEDPVAALRVYLDTTPNRVLFATESAGRRETLLQLLADNHLRPASSDSFQDW
LLGDSRFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKLGDPVVHSQHGIGRYMGLVTMDLGESETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQINEGTVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRQMLETLVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPTANTILIHRADKFGLAQ
LHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKEGKEPDLTSPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHNDSIDSIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGI
LKIDAGETVIGLQFIPNPPIDAMRIIEMVQKHKHIRLAGQDKLRIETRSPDLAVRVATVK
ETLRALGTPSRGTAASVAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacatcgccgcatcatcgcagtactccccgcccgtcgcgctcgtcaaagccggc
cagcgtttcgccttcgacggcacgcacggctcgtccgacgcgctgctgatcgcccgctac
catctcgcctatcgcgagaaggtgccgctgctcgcggtcgtgtgcgaaagcgctgtcgac
gcgcaacgtctggcgcaggagatcggcttctttgcgcccgaggcccgcgtacggctgctg
cccgactgggaaacgctgccttacgataccttttcaccgcatcaggatctggtctcggag
cggcttgccacgctgcacgatctcggcgaaggccgttgcgacattctgctggtgcccgcc
accacggcgctgtaccgcatgccgcccgcctcgtttctcgcggcttacacgttttccttc
tcgcagggcgagcgcctcgacgaagcgaaactcaagtcgcaactcacgctcgccggctac
gagcacgtcagccaggtggtgcgtccgggcgaatactgcgtgcgcggctcgctgctcgat
ctctatccgatgggctcgcccttgccctaccggatcgacctgttcgacgaccaggtcgac
tcgatccgcgcgttcgacccggacacgcagcgcagcctctatccggtgaaagacgtgcgc
ctgctgccgggccgcgaattccccttcgacgaagccgcgcgcaccgcatttcgcagccgc
tggcgcgagactttcgagggcgacccgagccgcgcgtcgatctacaaggatatcggcaac
agcgtgccgtccgcgggcatcgaatattatctgccgctcttcttcgacgacacggccacg
ctgttccattacctgcccgaaggcgcgcaactggcgttcgtcggcgatctcgacgcggcg
atccggcgtttcaccaacgacacgaagcagcgctacaacttcctctcgcacgaccgcgac
cggccgattctggagccgcagcgtctgttcctgtcggacgaagacttcttcacgctcgcc
aagccgttcgcgcggctcgcgctgcccgccaacgcgggtggcggctggtcgactccgttg
ccgaacctggcaattgaccgtcacgcggaagatccggtcgcggccttgcgcgtctatctc
gacaccacgccgaaccgcgtgctgttcgccacggaatccgcgggccggcgcgaaacgctg
ttgcagctgctcgccgacaatcatctgagaccggcatcgagtgacagtttccaggactgg
ctccttggtgactcgcgtttttcgttgggcgtcgcgccgctcgccaacggttttgccgtc
cccgtcgacggcatcgcgatcatcaccgaaaccgagttgtacggtccgctcgcgcgtcgc
gcggggcgccgccgccaggaacaggcgagcaacgtcgattcgatggtgcgcgatctgtcc
gagctgaaactcggcgatccggtcgtgcattcgcaacatggcatcggccgttatatgggc
ctcgtcacgatggatctcggcgaaagcgagaccgagttcctgcacctcgaatacgccggc
gacagcaagctgtatgtgccggtcgcgcagttgcacgtgatctcgcgctatagcggcgcc
gatccggaaagcgcgccgctgcactcgctcggctcgggccagtgggaaaaggccaaacgc
aaagccgcgcaacagattcgcgacaccgcagccgagttgctgaatctttacgcgcgccgc
gccgcacgttcaggccacgcgttcgcgctcgaaccgaaagactatgtgaagttcgccgag
agcttcggcttcgaggaaacgccggaccaggccgccgcgatcgcggccgtgatcggcgac
atgacgagcggcaaaccaatggatcgtctggtatgcggcgacgtcggcttcggcaagacc
gaagtcgcgttgcgcgcggccttcatcgcggtcatgggcggcaagcaggtggcgctcctc
tcgcccactacgctgctcgccgaacagcacacgcaaaccttcaccgatcgcttctccgac
tggccggtgcggattgccgaactgtcgcgcttcaagtcgaccaaggaagtcaacgcggcg
atccaccagatcaacgaaggcactgtcgatatcgtgatcggcacgcataagctgctttcg
tccgacgtgcaattcaagcggctgggactcgtgatcatcgacgaggaacatcgtttcggc
gtgcgtcagaaagaagcgctgaaggccttgcgcgccgaagtggacgtgctcacgctcacc
gccacgccgatcccgcggacgctcggcatggcgctcgaaggcctgcgcgatttctccgtg
atcgccaccgcgccgcaaaagcgcctcgcgatcaaaaccttcgtgcggcgcgaggaagac
agcgtgattcgcgaagccatgctgcgcgagttgaaacgcggcggccaggtctacttcctg
cacaacgaagtggagacgatcgagaatcgccggcagatgctcgaaacgctggtgcccgaa
gcgcgcattgcggtcgcgcatggacagatgcatgaacgcgaactcgaacgcgtgatgcgc
gacttcgtggcccagcgggccaacgtattgctgtgcacgaccattatcgaaaccggcatc
gacgtgccgaccgccaacaccatcctgattcaccgcgccgacaagttcggtctcgcgcaa
ttgcatcagttgcgcggacgcgtgggccgttcgcatcaccaggcctattcgtatctgctg
gtccacgatccgcaagggctgaccaaacaggcacaacgccgcctcgaagcgatccagcag
atggaggaactgggctcgggcttctatctggccatgcacgacctcgaaattcgcggcacg
ggcgaagtgctcggcgacaaacagtcgggcgaaattcacgaaatcggcttccagctctat
accgacatgctgaacgacgccgtgaaggcgctcaaggaaggcaaggagccggatctcacc
tcgccgctcgccgcgaccaccgagatcaacctgcacgcgccggcgattctccccgcggac
tattgcggcgatgtgcaggagcgtctgtcgctgtacaagcggctggctaattgcgaacac
aacgattcgatcgacagcattcaggaagagttgatcgaccgcttcggcaagctgccgccg
caagcgcatgcactggtggagacgcatcgcctgcggctcgcggcgaaaccgctgggcatt
ctgaagatcgatgccggcgaaaccgtgatcggcctgcaattcatccccaatccgccgatc
gacgcgatgcggatcatcgagatggtgcagaaacacaagcacatcaggctcgcaggccag
gacaagctgcgtatcgaaacgcgcagccccgatctcgcggtgcgtgtcgccacagtcaag
gaaaccttgcgcgcgctcggcacgcccagccgcggcacggcggccagcgtggccgcgcga
tga
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