Paraburkholderia dioscoreae: PDMSB3_2148
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Entry
PDMSB3_2148 CDS
T08115
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDMSB3_2148 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdio03019
]
PDMSB3_2148 (rhlE)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDMSB3_2148 (rhlE)
Messenger RNA biogenesis [BR:
pdio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDMSB3_2148 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_25
Motif
Other DBs
NCBI-ProteinID:
VVD28604
UniProt:
A0A5Q4YVD9
LinkDB
All DBs
Position
I:complement(2215420..2216865)
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AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR
QTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVA
ENNWRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGEIIRKPKKPKKSRVPHAAPRDMQVLSKKPRPQ
SGENQPKLAAQCAVAVGKGTSLVGGSPFSVQKPRSKPAGKPTAGSRKPAGKPAGGRGKRQ
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctcacttggcctgatcgatcctttgctgcgtaacgtgcaggatctcaat
taccagacacctacgccggtgcaggccaaggcgattcctgctgtgctgagtggcaaggac
gtcatggctgcggcacagaccggcactggcaaaacggcgggttttgcgctgccactgttg
caacggctggtgcaacacggcccggcggtgtccagcaaccgcgcgcgtgttctggtactg
gtgcccacgcgtgaactggccgaacaggtgctgcaaagctttatcgattacggcaaaggc
ctcgacttacgatttctggccgcctatggcggcgtgagtatcaacccgcagatgatgaag
ctgcgcaaaggcgtggatgtgctcgtcgctacgccgggccgtttgctggatctcaatcgc
cagaacgccgtgcagtttgatcaggtgcaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgagctcaacgccgtctttgctgcgttgcccgttcagcgc
cagaccttgctgttctctgccacgtttaccgatgatatccgcgcgatggcggcgggcatt
ttgcgcgacccgctcaatatcagcgtcagcccgcccaatgccacggctagcaagatcagg
cagtgggtggtgacggtggataaaaagaacaagcctgaccttttcatgcacctcgtggct
gagaacaactggcggcacgcgctggtgttcgtcaaaacccgcaatggcgtggattacctg
gcggccatgctggatgaagcgggctatgcggtcgacaccatccacggcgacaaaccgcaa
cccgcgcgcttgcgtgcgctggaacgtttcaagacgggcgaagtacagatgctggtagcc
accgatgtggctgcgcgcggtctggatatcgacgatctgccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaggactacgtgcaccggattggccgtaccggccgcgcgggcgcc
agcggcgtggcggtgtcccttgtgtgtgccgatgaagcgccgcaactggccgcgattgaa
gcactgatccggcaaacgctgcgccgtgaagaagaaccgggttttgaagcagaacaccgc
gtgccgcaaactagcgcgacgggcgagatcatcaggaagcccaaaaaacccaagaagtcc
agagtgccgcacgctgcgccgcgcgacatgcaggtgctcagcaaaaaaccgcgcccgcaa
agtggcgaaaaccaacccaagcttgcggcgcaatgcgccgtggctgtgggtaagggcaca
agcctggtgggcggtagcccattcagcgtgcaaaagccacgtagcaagcccgccggcaag
ccaactgcggggtcacgtaagccggctggcaaacccgctggtgggcgcgggaaacgccaa
tcttga
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